U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX554366: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Kentucky str. NY-FSL-R8-0916 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 455.6M bases, 262.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: PAN0
SAMN02664885 • SRS621644 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Kentucky
Library:
Name: Salmonella enterica str. NY-FSL-R8-0916 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Kentucky str. NY-FSL-R8-0916.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.42
Runs: 1 run, 1.1M spots, 455.6M bases, 262.2Mb
Run# of Spots# of BasesSizePublished
SRR13005611,117,149455.6M262.2Mb2014-06-01

ID:
791710

Supplemental Content

Related information

Recent activity