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SRX1294127: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 432,357 spots, 207.5M bases, 133.1Mb downloads

External Id: EXT00138298
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN02777771 • SRS1092958 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Kentucky
Library:
Name: Salmonella enterica subsp. enterica Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 432,357 spots, 207.5M bases, 133.1Mb
Run# of Spots# of BasesSizePublished
SRR2533578432,357207.5M133.1Mb2015-10-01

ID:
1849250

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