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SRX973513: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Johannesburg str. NY-N11252 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 633,305 spots, 308.5M bases, 164Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN03275951 • SRS888762 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica
Library:
Name: Salmonella enterica str. NY-N11252 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Johannesburg str. NY-N11252.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 633,305 spots, 308.5M bases, 164Mb
Run# of Spots# of BasesSizePublished
SRR1946897633,305308.5M164Mb2015-03-30

ID:
1415483

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