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SRX1539573: Whole genome shotgun sequencing of Salmonella enterica subsp. arizonae serovar IIIa 18:z4,z23:- by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 456,835 spots, 205.5M bases, 116.1Mb downloads

External Id: EXT00159002
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN04224341 • SRS1256052 • All experiments • All runs
Organism: Salmonella enterica subsp. arizonae serovar 18:z4,z23:-
Library:
Name: Salmonella enterica subsp. arizonae serovar IIIa 18:z4,z23:- Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. arizonae serovar IIIa 18:z4,z23:-.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 456,835 spots, 205.5M bases, 116.1Mb
Run# of Spots# of BasesSizePublished
SRR3111275456,835205.5M116.1Mb2016-01-21

ID:
2182666

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