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ERX11691030: Sequel II sequencing
1 PACBIO_SMRT (Sequel II) run: 2.4M spots, 27.4G bases, 12.1Gb downloads

Submitted by: institut national de recherche pour l'agriculture, l'alimentation et l'environnement ( inrae) (institut national de recherche pour l'agriculture,)
Study: High-fidelity annotated genome of the polyploid and quarantine root-knot nematode, Meloidogyne enterolobii
show Abstracthide Abstract
Root-knot nematodes of the genus Meloidogyne are obligatory plant endoparasites that cause substantial economic losses to the agricultural production and impact the global food supply. We report a high-quality genome assembly of Meloidogyne enterolobii using the high-fidelity long-read sequencing approach, developed by Pacific Biosciences, combined with a gap-aware sequence transformer, DeepConsensus. The resulting genome assembly spans 273 Mbp with 556 contigs, a GC% of 30 ± 0.042 and an N50 value of 2.11Mb, constituting a useful platform for comparative, population and functional genomics. Thus enabling us to perform high quality annotations of coding and non-coding genes.
Sample: Meloidogyne enterolobii genomic data
SAMEA114634004 • ERS17021786 • All experiments • All runs
Library:
Name: Meloidogyne_enterolobii_E1834_reads
Instrument: Sequel II
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: SINGLE
Runs: 1 run, 2.4M spots, 27.4G bases, 12.1Gb
Run# of Spots# of BasesSizePublished
ERR123141262,441,93327.4G12.1Gb2024-07-22

ID:
34018739

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