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DRX480640: Illumina HiSeq 1500 paired end sequencing of SAMD00635482
1 ILLUMINA (Illumina HiSeq 1500) run: 16.1M spots, 2G bases, 1.4Gb downloads

Submitted by: RIKEN_BDR
Study: Ferret single cell transcriptomics analysis
show Abstracthide Abstract
We applied 10X Genomics scRNA-seq technology to analyze molecular signatures of neural progenitor subtypes at stages covering early-to-late neurogenesis and gliogenesis (E25, E34, E40, P1, P5, P10) in ferret (Mustela putorius furo). We isolated cell populations in two different ways to enrich progenitor subtypes ; (1) FACS-sorting of fluorescent cells from tissues that had been electroporated at E30 or E34, with AzamiGreen (AG) expression vector (Karasawa et. al. 2003) under the control of Hes5 promoter with a d2 degradation signal (Ohtsuka et al. 2006), (2) taking cells from the cerebral cortex after discarding the CP, thereby collecting cells from the VZ, SVZ and intermediate zone (IZ) with a less abundance of mature neurons in the CP. These two cell populations were combined for downstream analyses.
Sample: single-cell-RNA_seq_cells_from_E40_ferret_dorsal_brain_sorted
SAMD00635482 • DRS332038 • All experiments • All runs
Library:
Name: E40_AG
Instrument: Illumina HiSeq 1500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA_oligo_dT
Layout: PAIRED
Construction protocol: 10XGenomics chromium 3' v2
Runs: 1 run, 16.1M spots, 2G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
DRR49647916,143,5992G1.4Gb2023-09-26

ID:
29790052

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