Whole genome shotgun sequencing of Escherichia coli serovar O157:H7 b... - SRA

SRX1624552: Whole genome shotgun sequencing of Escherichia coli serovar O157:H7 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 553.7M bases, 311.3Mb downloads

External Id: EXT00171736

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: California Department of Health - FDLB Micro

PRJNA277984 • SRP071258 • All experiments • All runs

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Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.

Sample:

SAMN04510400 • SRS1334337 • All experiments • All runs

Organism: Escherichia coli

Library:

Name: Escherichia coli serovar O157:H7 Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Escherichia coli serovar O157:H7.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 1.2M spots, 553.7M bases, 311.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR3217357	1,210,932	553.7M	311.3Mb	2016-03-10

ID:: 2321280

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