GSM2781592: HL-48 Xylose Rep3; Halomonas sp. HL48; RNA-Seq - SRA

SRX3181548: GSM2781592: HL-48 Xylose Rep3; Halomonas sp. HL48; RNA-Seq
6 ABI_SOLID (AB 5500xl Genetic Analyzer) runs: 22.6M spots, 1.1G bases, 650.3Mb downloads

Submitted by: NCBI (GEO)

Study: Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture

PRJNA406985 • SRP117464 • All experiments • All runs

show Abstracthide Abstract

Testing of response of hetertrophic partners (Halomonas sp. HL-48 and Marinobacter sp. HL-58) to both axenic and co-culture growth using both glucose and xylose Overall design: Both Halomonas sp. HL-48 and Marinobacter sp. HL-58 were grown either on glucose axenically or in co-culture and on xylose in co-culture. Halomonas HL-48 was also grown on xylose axenically. Transcriptomic data was collected under each condition and used to determine each organisms response to the other under both competitive and commensal conditions.

Sample: HL-48 Xylose Rep3

SAMN07637234 • SRS2510279 • All experiments • All runs

Organism: Halomonas sp. HL48

Library:

Instrument: AB 5500xl Genetic Analyzer

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: RNA was extracted using Trizol following by DNAseI treatment using Qiagen RNAseay mini column Template cDNA was prepared using the Applied Biosystems SOLiD® Total RNA-Seq Kit (Life Technologies, Carlsbad, CA) according to manufacturer's protocol. Sequencing was carried using the SOLiDTM 5500XL protocol (Life Technologies).

Experiment attributes:

GEO Accession: GSM2781592

Links:

NCBI link: NCBI Entrez (gds)

Runs: 6 runs, 22.6M spots, 1.1G bases, 650.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR6031287	3,814,708	190.7M	110.2Mb	2017-09-14
SRR6031288	3,704,955	185.2M	108.2Mb	2017-09-14
SRR6031289	3,745,693	187.3M	107.2Mb	2017-09-14
SRR6031290	3,841,860	192.1M	109.5Mb	2017-09-14
SRR6031291	3,683,448	184.2M	105.7Mb	2017-09-14
SRR6031292	3,827,093	191.4M	109.5Mb	2017-09-14

ID:: 4483501

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity