Mapped reads for uncultivated Novosphingobium bacterium UBA11046 geno... - SRA

SRX3572760: Mapped reads for uncultivated Novosphingobium bacterium UBA11046 genome recovered from SRX472115
1 ILLUMINA (Illumina HiSeq 2000) run: 162,047 spots, 29.2M bases, 16.4Mb downloads

Design: Reads from SRX472115 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA11046 genome.

Submitted by: University of Queensland

Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.

PRJNA417962 • SRP130174 • All experiments • All runs

show Abstracthide Abstract

Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.

Sample: Uncultivated Novosphingobium bacterium UBA11046 genome recovered from SRX472115

SAMN08019615 • SRS2843732 • All experiments • All runs

Organism: Novosphingobium sp.

Library:

Name: UBA11046_library

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 162,047 spots, 29.2M bases, 16.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR6482724	162,047	29.2M	16.4Mb	2018-03-05

ID:: 4958262

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Sequence Read Archive

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