Exome Capture of Triticum dicoccoides: Rosh Pinna, sample ISR-4-18, 1... - SRA

SRX5094615: Exome Capture of Triticum dicoccoides: Rosh Pinna, sample ISR-4-18, 1980
1 ILLUMINA (Illumina HiSeq 2500) run: 3M spots, 762.3M bases, 271Mb downloads

Design: DNA: Macherey-Nagel NucleoSpin Plant II, Library: Kapa HyperPlus DNA, BIOO NEXTflex96 Adapters, Size selection: Agencourt AMPure XP beads, Capture: Nimblegen SeqCap EZ Design panel, SeqCap EZ HyperCap Workflow, Seq: Two HiSeq lanes with SBS v4 2x125 bases

Submitted by: Agriculture & Agri-Food Canada

Study: Triticum dicoccoides Genome Sequencing Using Exome Capture

PRJNA507456 • SRP172451 • All experiments • All runs

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Ten populations of wild emmer (Triticum dicoccoides) were collected 28 years apart. Single nucleotide polymorphisms (SNPs) were detected using exome capture sequences. Focus was placed on those SNPs that were deleterious and associated with the two sample times to examine the change in diversity over time.

Sample: The tissue originated from seed collected in 1980 or 2008 and grown in 2008.

SAMN10505754 • SRS4106224 • All experiments • All runs

Organism: Triticum dicoccoides

Library:

Name: 1980-04-18-ISR_S18

Instrument: Illumina HiSeq 2500

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Runs: 1 run, 3M spots, 762.3M bases, 271Mb

Run	# of Spots	# of Bases	Size	Published
SRR8279552	3,025,052	762.3M	271Mb	2020-07-01

ID:: 6871077

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