Exome Capture of Triticum dicoccoides: Tabigha - basalt, sample FT-10... - SRA

SRX5094449: Exome Capture of Triticum dicoccoides: Tabigha - basalt, sample FT-10-5, 1980
1 ILLUMINA (Illumina HiSeq 2500) run: 2.4M spots, 595.8M bases, 198.1Mb downloads

Design: DNA: Macherey-Nagel NucleoSpin Plant II, Library: Kapa HyperPlus DNA, BIOO NEXTflex96 Adapters, Size selection: Agencourt AMPure XP beads, Capture: Nimblegen SeqCap EZ Design panel, SeqCap EZ HyperCap Workflow, Seq: Two HiSeq lanes with SBS v4 2x125 bases

Submitted by: Agriculture & Agri-Food Canada

Study: Triticum dicoccoides Genome Sequencing Using Exome Capture

PRJNA507456 • SRP172451 • All experiments • All runs

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Ten populations of wild emmer (Triticum dicoccoides) were collected 28 years apart. Single nucleotide polymorphisms (SNPs) were detected using exome capture sequences. Focus was placed on those SNPs that were deleterious and associated with the two sample times to examine the change in diversity over time.

Sample: The tissue originated from seed that was increased once from seed collected either in 1980 or 2008.

SAMN10505862 • SRS4106058 • All experiments • All runs

Organism: Triticum dicoccoides

Library:

Name: 1980-10-05-FT_S47

Instrument: Illumina HiSeq 2500

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Runs: 1 run, 2.4M spots, 595.8M bases, 198.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR8279718	2,364,138	595.8M	198.1Mb	2020-07-01

ID:: 6870911

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