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SRX5670497: GSM3719250: Mp_Maize3; Myzus persicae; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 39.9M spots, 10G bases, 3.1Gb downloads

Submitted by: NCBI (GEO)
Study: An aphid lncRNA is a member of an aphid-specific family that translocates into plant and is a virulence factor [HostSwap Expt]
PRJNA532419 • SRP192091 • All experiments • All runs
show Abstracthide Abstract
This study provides evidence that aphid lncRNAs play a role in regulating aphid-plant interactions and at least one M. persicae lncRNA is a virulence factor Overall design: RNA-Seq exeperiment was designed to investigate the genes that are involved in host adaptaion in Myzus percicae. The following gtf files contain manual annotation of Ya gene in Aphis glycines (A.glycines.Ya.gtf) Acyrthosiphon pisum(A.pisum.Ya.gtf) D. noxia (D.noxia.Ya.gtf) Myzus cerasi (M.cerasi.Ya.gtf) Rhopalosiphum padi (R.padi.Ya.gtf) and the 'Ya_aphid.fa' contains cDNA sequence in fasta format for the above gtf files.
Sample: Mp_Maize3
SAMN11399153 • SRS4613356 • All experiments • All runs
Organism: Myzus persicae
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using RNeasy Mini Kit (250) from QIAGEN Strand-specific libraries constructed using the Illumina TruSeq RNA Library Preparation kit following manufacturer's instructions
Experiment attributes:
GEO Accession: GSM3719250
Links:
Runs: 1 run, 39.9M spots, 10G bases, 3.1Gb
Run# of Spots# of BasesSizePublished
SRR888473339,926,73310G3.1Gb2020-06-03

ID:
7643801

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