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SRX13601629: WGS of TA lines
1 ILLUMINA (Illumina HiSeq 2500) run: 6.7M spots, 1G bases, 361.4Mb downloads

Design: A paired end library with approximately 300 base inserts was constructed for each sample using 75 bp paired-end reads.
Submitted by: Duke University
Study: Transposon mobility and genome-wide mutations in Cryptococcus neoformans var. neoformans
show Abstracthide Abstract
During murine infection, transposon mutagenesis is a significant driver of spontaneous mutations in the human fungal pathogen Cryptococcus neoformans var. neoformans. We have shown that mutations caused by transposable element (TE) insertion into reporter genes were dramatically elevated at high temperature (37 versus 30 degrees Celsius) in vitro, suggesting that heat stress stimulates TE mobility. Here, to explore the genome-wide impact of TE mobilization, we generated transposon accumulation lines (TA lines) by in vitro passage of C. neoformans var. neoformans strain XL280 for multiple generations at 30 degrees Celsius or at the host-relevant temperature of 37 degrees Celsius. Utilizing whole genome sequencing, we identified native copies of mobile TEs and mapped multiple de novo insertions in these TA lines.
Sample: JW-S14
SAMN24614167 • SRS11491007 • All experiments • All runs
Library:
Name: JW-S14
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 6.7M spots, 1G bases, 361.4Mb
Run# of Spots# of BasesSizePublished
SRR174302916,704,1711G361.4Mb2023-01-02

ID:
18892473

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