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SRX19210617: GSM7008702: MAHA_2ws; Lathyrus sativus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 26.9M spots, 6.8G bases, 2.2Gb downloads

External Id: GSM7008702_r1
Submitted by: John Innes Centre
Study: Sequence data for annotation and scaffolding of the Lathyrus sativus LS007 Rbp1.0 genome assembly
show Abstracthide Abstract
This dataset includes RNAseq data of 7 tissues/developmental stages of Lathyrus sativus genotype LSWT11 and 2 tissues with drought- and well-watered treatments of Lathyrus sativus genotypes LS007 and Mahateora. These data were used in the functional annotation pipeline of the Rbp1.0 genome assembly of LS007. The multi-tissue transcriptome was also used to support gene candidate identification by mRNA abundance. Also included is Hi-C sequencing data used to scaffold the assembly into pseudochromosomes Overall design: RNAseq data to inform a genome annotation pipeline - replication of multi-tissue transcriptome as shown below, three replicates for each genotype/treatment combination in drought experiment; RNAseq for RNA read counting to support gene candidate identification, replication as shown below, HiC for scaffolding of genome assembly
Sample: MAHA_2ws
SAMN32953616 • SRS16617943 • All experiments • All runs
Library:
Name: GSM7008702
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Rneasy Plant Mini Kit Qiagen TruSeq RNA
Runs: 1 run, 26.9M spots, 6.8G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
SRR2326639126,944,2506.8G2.2Gb2023-01-31

ID:
26413310

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