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SRX23002129: mRNA sequencing of D. firmibasis: finger/slug stage (16h)
1 ILLUMINA (Illumina NovaSeq 6000) run: 67M spots, 20.2G bases, 6Gb downloads

Design: Amoebae from given developmental stage washed from bacteria and RNA isolated using TRIzol. RNA Sequencing libraries prepared from total RNA using the TruSeq stranded mRNA library preparation kit
Submitted by: Uppsala University
Study: Dictyostelium firmibasis strain:TNS-C-14 Genome sequencing
show Abstracthide Abstract
The aim of this study was to provide the community with a high quality assembly of Dictyostelium firmibasis. Long read sequencing of the Dictyostelium firmibasis genome was performed, followed by short read sequencing for polishing and mRNA-seq to allow for annotation of the genome. The resulting high quality genome allows for a detailed comparison to the model organism Dictyostelium discoideum. From an evolutionary perspective, this can be used to study conservation of genes, as well as investigate the evolutionary timeline of the social amoebae. Investigating conservation and expression of genes involved in multicellular development in Dictyostelium firmibasis can shed a light on which genes are required to evolve this multicellular lifestyle.
Sample: mRNA sequencing of Dictyostelium firmibasis developed to finger/slug stage
SAMN39063589 • SRS19966067 • All experiments • All runs
Library:
Name: Dfir_mRNA_16h
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 67M spots, 20.2G bases, 6Gb
Run# of Spots# of BasesSizePublished
SRR2732502266,973,13420.2G6Gb2024-04-29

ID:
31077747

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