pond water sample 1-2 in Zhuhai in Jul - SRA

SRX25337673: pond water sample 1-2 in Zhuhai in Jul
1 ILLUMINA (Illumina HiSeq 3000) run: 32,061 spots, 13.5M bases, 4.2Mb downloads

Design: Approximately 500 mL of water was filtered through a glass fiber filter with an aperture of 0.22 m (Whatman, Metstone, UK) to separate the microbiota. The V4V5 hypervariable region of the 16S rRNA gene was amplified using the universal primer pair 515F and 907R (Cai et al., 2016; Huang et al., 2021) with a 12-nucleotide sample-specific barcode.

Submitted by: Pearl River Fisheries Research Institute

Study: Influence of aquaculture practices on microbiota composition and pathogen abundance in pond ecosystems in South China

PRJNA1135658 • SRP519768 • All experiments • All runs

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To explore the relationship between pond water and sediment microbiota (especially potential pathogens) and physicochemical indicators under various aquaculture conditions, pond water and sediment samples were collected from 21 monitoring sites across eastern, western, and northern Guangdong, as well as the Pearl River Delta in November 2021, March 2022, and July 2022. The microbiota structures were analyzed using high-throughput sequencing of the 16S rRNA gene.

Sample: pond water sample 1-2 in Zhuhai in Jul

SAMN42511187 • SRS22005135 • All experiments • All runs

Organism: pond metagenome

Library:

Name: JWZH1-2

Instrument: Illumina HiSeq 3000

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Runs: 1 run, 32,061 spots, 13.5M bases, 4.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR29839750	32,061	13.5M	4.2Mb	2024-07-16

ID:: 33680151

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