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SRX25726046: SK-OV-3-DOX-3A
1 BGISEQ (MGISEQ-2000RS) run: 59.6M spots, 11.9G bases, 8.2Gb downloads

Design: The project involves a small-scale study using rRNA depletion stranded library preparation for eight samples, which were sequenced using the DNBseq platform with paired-end 100 bp (PE100) reads to perform high-throughput sequencing analysis
Submitted by: Key Laboratory of Tropical Aquatic Germplasm of Hainan Province
Study: Detection of APOBEC3B-mediated RNA editing sites in SK-OV-3 cells
show Abstracthide Abstract
RNA editing is a key post-transcriptional modification that enhances proteomic diversity and regulates gene expression.APOBEC3 family has emerged as a significant player in this mechanism, with APOBEC3A (A3A) showing notable roles in immune response and stress conditions. APOBEC3B (A3B), another family member, has garnered attention for its potential role in breast cancer genomic mutations. The SK-OV-3 cell line, known for its application in ovarian cancer research, provides a robust model for studying gene expression alterations. In this study, we employ an inducible expression cell model and a novel methodology for identifying differential variants in RNA (DVRs) to map A3B-mediated RNA editing sites.
Sample: RNA sequencing of SK-OV-3
SAMN43214442 • SRS22366851 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: SK-OV-3-DOX-3A
Instrument: MGISEQ-2000RS
Strategy: ssRNA-seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 59.6M spots, 11.9G bases, 8.2Gb
Run# of Spots# of BasesSizePublished
SRR3026494759,550,24011.9G8.2Gb2024-08-16

ID:
34757139

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