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SRX26026528: short-read data of Aedes aegypti
1 ILLUMINA (Illumina HiSeq 4000) run: 1.4M spots, 422.1M bases, 186.1Mb downloads

Design: DNA extraction from carcasses using Chemagic360 or Qiagen Dneasy kit. PCR-free library prep protocol. At least 150ng of gDNA from each sample were fragmented to target size between 350 and 400 basepairs. libraries were pooled and sequenced on the Illumina HiSeq 4000 and HiSeqX platforms to generate 2x150 basepair reads. Reads mapped to the Ae. aegypti L5 genome reference (NCBI WGS Project NIGP01) using BWA mem (v0.7.16) with default parameters, then sorted using samtools sort (1.1), and duplicate reads were marked using Picards markdup function (2.1.0, http://broadinstitute.github.io/picard/). Unmapped reads and their pairs are included in this file.
Submitted by: Bucknell University
Study: EVE-X: Software to Identify Novel Viral Insertions in Wild-Caught Arthropod Hosts from Next-Generation Short Read Data
PRJNA1158798 • SRP531586 • All experiments • All runs
show Abstracthide Abstract
Aedes aegypti sequence data from "EVE-X: Software to Identify Novel Viral Insertions in Wild-Caught Arthropod Hosts from Next-Generation Short Read Data", Molecular Ecology Resources, 2024
Sample:
SAMN43548809 • SRS22598346 • All experiments • All runs
Organism: Aedes aegypti
Library:
Name: Australia_21
Instrument: Illumina HiSeq 4000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.4M spots, 422.1M bases, 186.1Mb
Run# of Spots# of BasesSizePublished
SRR306039231,440,846422.1M186.1Mb2024-10-04

ID:
35131211

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