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SRX26444045: WGS of Brucella bacterial culture
1 ILLUMINA (NextSeq 1000) run: 8.1M spots, 2.4G bases, 767Mb downloads

Design: NGS libraries were prepared using Illumina DNA prep. Sequencing was performed on the Illumina NextSeq instrument using the NextSeq 1000 P2 Reagents (300 Cycles) v3 kit.
Submitted by: Johns Hopkins University
Study: Long-read 16S rRNA NGS for identification of bacterial isolates
PRJNA1173255 • SRP539874 • All experiments • All runs
show Abstracthide Abstract
153 bacterial isolates were identified by ~500 bp Sanger sequencing and by long-read 16S rRNA Nanopore sequencing (Oxford Nanopore technologies). Isolates with discordant results between the two methods or unable to be identified underwent WGS on the Illumina NextSeq instrument using the NextSeq 1000/2000 P2 Reagents (300 Cycles) v3 kit (Illumina) to identify definitive taxa.
Sample:
SAMN44298497 • SRS22960146 • All experiments • All runs
Organism: Brucella intermedia
Library:
Name: B10310
Instrument: NextSeq 1000
Strategy: WGS
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 8.1M spots, 2.4G bases, 767Mb
Run# of Spots# of BasesSizePublished
SRR310596398,105,8932.4G767Mb2024-10-21

ID:
35731727

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  • SAMN44298497 (1)
    SRA
  • G-protein coupled receptor 15, partial [Yuhina diademata]
    G-protein coupled receptor 15, partial [Yuhina diademata]
    gi|1341088346|gb|AVA02070.1|
    Protein
  • Genome, Human
    Genome, Human
    The complete genetic complement contained in the DNA of a set of CHROMOSOMES in a HUMAN. The length of the human genome is about 3 billion base pairs.<br/>Year introduced: 1990
    MeSH
  • Epigenome
    Epigenome
    A network of chemical compounds surrounding DNA that modify the genome without altering the DNA sequences and have a role in determining which genes are active in a cell....<br/>Year introduced: 2020
    MeSH

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