5Y5E: Crystal structure of phospholipase A2 with inhibitor

PDB ID: 5Y5EDownload
MMDB ID: 163526
PDB Deposition Date: 2017/8/8
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.8  Å
Source Organism:
Similar Structures:
Biological Unit for 5Y5E: monomeric; determined by author and by software (PISA)
Molecular Components in 5Y5E
Label Count Molecule
Protein (1 molecule)
1
Group IIE Secretory Phospholipase A2
(Gene symbol: PLA2G2E)
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
1
GLYCEROLGLYCEROL
2
1
2-[2-methyl-3-oxamoyl-1-[[2-(trifluoromethyl)phenyl]methyl]indol-4-yl]oxyethanoic acid2-[2-methyl-3-oxamoyl-1-[[2-(trifluoromethyl)phenyl]methyl]indol-4-yl]oxyethanoic acid
3
5
CHLORIDE IONCHLORIDE ION
4
1
CALCIUM IONCALCIUM ION
5
1
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
6
1
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303