6FAI: Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

PDB ID: 6FAIDownload
MMDB ID: 159822
PDB Deposition Date: 2017/12/15
Updated in MMDB: 2022/11
Experimental Method:
electron microscopy
Resolution: 3.4  Å
Source Organism:
Similar Structures:
Biological Unit for 6FAI: 36-meric; determined by author and by software (PISA)
Molecular Components in 6FAI
Label Count Molecule
Proteins (35 molecules)
1
40S Ribosomal Protein S27-a
(Gene symbol: RPS27A)
Molecule annotation
1
40S Ribosomal Protein S28-a
(Gene symbol: RPS28A)
Molecule annotation
1
40S Ribosomal Protein S29-a
(Gene symbol: RPS29A)
Molecule annotation
1
40S Ribosomal Protein S30-a
(Gene symbol: RPS30A)
Molecule annotation
1
Guanine Nucleotide-binding Protein Subunit Beta-like Protein
(Gene symbol: ASC1)
Molecule annotation
1
Pre-rrna-processing Protein Pno1
(Gene symbol: PNO1)
Molecule annotation
1
Essential Nuclear Protein 1
(Gene symbol: ENP1)
Molecule annotation
1
Protein Ltv1
(Gene symbol: LTV1)
Molecule annotation
1
Ribosome Biogenesis Protein Tsr1
(Gene symbol: TSR1)
Molecule annotation
1
Serine/threonine-protein Kinase Rio2
(Gene symbol: RIO2)
Molecule annotation
1
40S Ribosomal Protein S0-a
(Gene symbol: RPS0A)
Molecule annotation
1
40S Ribosomal Protein S1-a
(Gene symbol: RPS1A)
Molecule annotation
1
40S Ribosomal Protein S2
(Gene symbol: RPS2)
Molecule annotation
1
40S Ribosomal Protein S3
(Gene symbol: RPS3)
Molecule annotation
1
40S Ribosomal Protein S4-a
(Gene symbol: RPS4A)
Molecule annotation
1
40S Ribosomal Protein S5
(Gene symbol: RPS5)
Molecule annotation
1
40S Ribosomal Protein S6-a
(Gene symbol: RPS6B)
Molecule annotation
1
40S Ribosomal Protein S7-a
(Gene symbol: RPS7A)
Molecule annotation
1
40S Ribosomal Protein S8-a
(Gene symbol: RPS8A)
Molecule annotation
1
40S Ribosomal Protein S9-a
(Gene symbol: RPS9A)
Molecule annotation
1
40S Ribosomal Protein S11-a
(Gene symbol: RPS11A)
Molecule annotation
1
40S Ribosomal Protein S12
(Gene symbol: RPS12)
Molecule annotation
1
40S Ribosomal Protein S13
(Gene symbol: RPS13)
Molecule annotation
1
40S Ribosomal Protein S14-a
(Gene symbol: RPS14A)
Molecule annotation
1
40S Ribosomal Protein S15
(Gene symbol: RPS15)
Molecule annotation
1
40S Ribosomal Protein S16-a
(Gene symbol: RPS16B)
Molecule annotation
1
40S Ribosomal Protein S17-a
(Gene symbol: RPS17A)
Molecule annotation
1
40S Ribosomal Protein S18-a
(Gene symbol: RPS18A)
Molecule annotation
1
40S Ribosomal Protein S19-a
(Gene symbol: RPS19A)
Molecule annotation
1
40S Ribosomal Protein S20
(Gene symbol: RPS20)
Molecule annotation
1
40S Ribosomal Protein S21-a
(Gene symbol: RPS21A)
Molecule annotation
1
40S Ribosomal Protein S22-a
(Gene symbol: RPS22A)
Molecule annotation
1
40S Ribosomal Protein S23-a
(Gene symbol: RPS23A)
Molecule annotation
1
40S Ribosomal Protein S24-a
(Gene symbol: RPS24B)
Molecule annotation
1
40S Ribosomal Protein S25-a
(Gene symbol: RPS25A)
Molecule annotation
Nucleotide(1 molecule)
1
20S Ribosomal RNA
Molecule annotation
Chemicals and Non-standard biopolymers (48 molecules)
1
2
ZINC IONZINC ION
2
46
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303