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7BRQ:
Crystal structure of human FAM134B LIR fused to human GABARAP
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PDB ID:
7BRQ
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MMDB ID:
189934
PDB Deposition Date:
2020/3/29
Updated in MMDB:
2023/12
Experimental Method:
x-ray diffraction
Resolution:
1.404 Å
Source Organism:
Homo sapiens
Similar Structures:
VAST+
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Biological Unit
Asymmetric Unit
Biological Unit for 7BRQ: monomeric; determined by author and by software (PISA)
Molecular Graphic
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Interactions
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A
A: Reticulophagy regulator 1,Gamma-aminobutyric acid receptor-associated protein
1
GOL: GLYCEROL
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Format:
ASN.1 (Cn3D)
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Data Set:
alpha-Carbons
Single 3D structure
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Molecular Components in 7BRQ
Label
Count
Molecule
Protein (1 molecule)
A
1
Reticulophagy Regulator 1,gamma-aminobutyric Acid Receptor-associated Protein
(Gene symbol:
GABARAP
)
1 Protein
SS Diagram
Features
Domain Families
Specific Hits
Super Families
1
25
50
75
100
125
137
137 residues, click to see VAST similar structures.
helix 32-46
helix 78-87
helix 111-119
strand 48-57
strand 68-74
strand 97-101
strand 125-132
Atg7 interaction site
Atg7 interaction site(25)
location: 49, residue: R
location: 55, residue: E
location: 56, residue: K
location: 67, residue: K
location: 70, residue: Y
location: 79, residue: G
location: 80, residue: Q
location: 82, residue: Y
location: 83, residue: F
location: 84, residue: L
location: 86, residue: R
location: 87, residue: K
location: 88, residue: R
location: 93, residue: A
location: 94, residue: E
location: 96, residue: A
location: 97, residue: L
location: 98, residue: F
location: 100, residue: F
location: 103, residue: N
location: 104, residue: V
location: 105, residue: I
location: 107, residue: P
location: 108, residue: T
location: 109, residue: S
Atg4 interaction site
Atg4 interaction site(19)
location: 57, residue: A
location: 82, residue: Y
location: 86, residue: R
location: 93, residue: A
location: 94, residue: E
location: 95, residue: D
location: 96, residue: A
location: 97, residue: L
location: 98, residue: F
location: 100, residue: F
location: 103, residue: N
location: 104, residue: V
location: 105, residue: I
location: 106, residue: P
location: 107, residue: P
location: 108, residue: T
location: 129, residue: A
location: 131, residue: S
location: 132, residue: D
Ubl_ATG8_GABARAP_like
cd16127 (26-132): ubiquitin-like (Ubl) domain found in gamma-aminobutyric acid receptor-associated protein (GABARAP) and similar proteins; sub-family of the autophagy-related 8 (ATG8) protein family
Ubl1_cv_Nsp3_N-like superfamily
cl28922(26-132): This ubiquitin-like (Ubl) domain (Ubl1) is found at the N-terminus of coronavirus Nsp3, a large multi-functional multi-domain protein which is an...
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Chemical and Non-standard biopolymers (1 molecule)
1
1
GLYCEROL
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Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
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