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7QGG: Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state

PDB ID:	7QGG Download
MMDB ID:	221904
PDB Deposition Date:	2021/12/8
Updated in MMDB:	2022/10
Experimental Method:	electron microscopy
Resolution:	2.86 Å
Source Organism:	Rattus norvegicus
Similar Structures:

Biological Unit for 7QGG: 84-meric; determined by author

Molecular Components in 7QGG
Label	Count	Molecule
Proteins (77 molecules)
SA	1	40S Ribosomal Protein SA
SB	1	40S Ribosomal Protein S3A
SD	1	40S Ribosomal Protein S3
SE	1	40S Ribosomal Protein S4, X Isoform
SF	1	40S Ribosomal Protein S5
SH	1	40S Ribosomal Protein S7
SI	1	40S Ribosomal Protein S8
SK	1	40S Ribosomal Protein S10
SL	1	40S Ribosomal Protein S11
SP	1	40S Ribosomal Protein S15
SQ	1	Rps16 Protein
SR	1	40S Ribosomal Protein S17
SS	1	40S Ribosomal Protein S18
ST	1	40S Ribosomal Protein S19
SU	1	40S Ribosomal Protein S20
SV	1	40S Ribosomal Protein S21
SX	1	40S Ribosomal Protein S23
Sa	1	40S Ribosomal Protein S26
Sc	1	40S Ribosomal Protein S28
Sd	1	40S Ribosomal Protein S29
Sg	1	Receptor of Activated Protein C Kinase 1
SC	1	40S Ribosomal Protein S2
SG	1	40S Ribosomal Protein S6
SJ	1	40S Ribosomal Protein S9
SM	1	40S Ribosomal Protein S12
SN	1	40S Ribosomal Protein S13
SO	1	40S Ribosomal Protein S14
SW	1	40S Ribosomal Protein S15a
SY	1	40S Ribosomal Protein S24
SZ	1	40S Ribosomal Protein S25
Sb	1	40S Ribosomal Protein S27
Se	1	Ubiquitin-like Domain-containing Protein
Sf	1	Ubiquitin-40s Ribosomal Protein S27a
A	1	60S Ribosomal Protein L8
B	1	60S Ribosomal Protein L3
C	1	60S Ribosomal Protein L4
F	1	60S Ribosomal Protein L5
G	1	60S Ribosomal Protein L6
H	1	60S Ribosomal Protein L7
I	1	60S Ribosomal Protein L7A
J	1	60S Ribosomal Protein L9
K	1	60S Ribosomal Protein L10
L	1	60S Ribosomal Protein L11
M	1	60S Ribosomal Protein L13
N	1	60S Ribosomal Protein L14
O	1	Ribosomal Protein L15
P	1	60S Ribosomal Protein L13a
Q	1	60S Ribosomal Protein L17
R	1	60S Ribosomal Protein L18
S	1	Ribosomal Protein L19
T	1	60S Ribosomal Protein L18a
U	1	60S Ribosomal Protein L21
V	1	60S Ribosomal Protein L22
W	1	60S Ribosomal Protein L23
X	1	60S Ribosomal Protein L24
Y	1	60S Ribosomal Protein L23a
Z	1	60S Ribosomal Protein L26
a	1	60S Ribosomal Protein L27
b	1	60S Ribosomal Protein L27a
c	1	60S Ribosomal Protein L29
d	1	60S Ribosomal Protein L30
e	1	60S Ribosomal Protein L31
f	1	60S Ribosomal Protein L32
g	1	60S Ribosomal Protein L35a
h	1	60S Ribosomal Protein L34
i	1	60S Ribosomal Protein L35
j	1	60S Ribosomal Protein L36
k	1	Ribosomal Protein L37
l	1	60S Ribosomal Protein L38
m	1	60S Ribosomal Protein L39
n	1	Ubiquitin-60s Ribosomal Protein L40
o	1	60S Ribosomal Protein L41
p	1	Ribosomal Protein L36a
q	1	60S Ribosomal Protein L37a
r	1	60S Ribosomal Protein L28
Cz	1	60S Ribosomal Protein L10a
y	1	Ala-ala-lys-ala
Nucleotides(7 molecules)
S2	1	RNA (1872-mer)
D	1	RNA (157-mer)
E	1	RNA (121-mer)
t	1	RNA (4803-mer)
u	1	RNA (76-mer)
v	1	RNA (76-mer)
w	1	RNA (5'-d(p()p()p()p())-r(pupupapcpgpgpcpgpgpup()p()p()p()p()p())-3')
Chemicals and Non-standard biopolymers (39 molecules)
1	33	MAGNESIUM ION
2	6	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303