NCBI
National Center for
Biotechnology Information
Search
6FZT:
Crystal structure of Smad8_9-MH1 bound to the GGCGC site
Citation is unavailable
PDB ID:
6FZT
Download
MMDB ID:
179978
PDB Deposition Date:
2018/3/15
Updated in MMDB:
2020/10
Experimental Method:
x-ray diffraction
Resolution:
2.46 Å
Source Organism:
Homo sapiens
Similar Structures:
VAST+
Download sequence data
Biological Unit
Asymmetric Unit
Biological Unit for 6FZT: heptameric; determined by author
Molecular Graphic
?
3D view
full-featured 3D viewer
Download Cn3D
Interactions
?
A
A: Mothers against decapentaplegic homolog 9
B
B: Mothers against decapentaplegic homolog 9
C
C: DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3')
D
D: DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3')
1
ZN: ZINC ION
2
GOL: GLYCEROL
B_0
B_0: Mothers against decapentaplegic homolog 9
C_1
C_1: DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3')
D_1
D_1: DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3')
1
ZN: ZINC ION
2
GOL: GLYCEROL
ZN
ZN: ZINC ION
GOL
GOL: GLYCEROL
Drag symbols to move
Double click symbols to explore molecules
Protein
Nucleotide
Chemical
Download Stucture Data
?
Download
Format:
ASN.1 (Cn3D)
PDB
XML
JSON
PNG (image)
Data Set:
alpha-Carbons
Single 3D structure
* Mouse right-click to bring up context menu
Molecular Components in 6FZT
Label
Count
Molecule
Proteins (3 molecules)
A
B
B_0
3
Mothers Against Decapentaplegic Homolog 9
(Gene symbol:
SMAD9
)
3 Proteins
SS Diagram
3D Domains
1
25
50
75
100
125
140
140 residues, click to see VAST similar structures.
helix 15-23
helix 29-45
helix 51-61
helix 88-96
strand 68-73
strand 78-82
strand 83-87
strand 106-110
strand 122-127
strand 130-134
Domain 1 (27-140): click to see VAST similar structures
1
click domain graphic to toggle highlight of corresponding residues in 3D viewer
Nucleotides(4 molecules)
C
D
C_1
D_1
4
DNA (5'-d(p*tp*gp*cp*ap*gp*gp*cp*gp*cp*gp*cp*cp*tp*gp*cp*a)-3')
4 Nucleotides
1
5
10
16
Chemicals and Non-standard biopolymers (6 molecules)
1
3
ZINC ION
2
3
GLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
You are here:
NCBI
>
Computational Biology Branch
>
Structure Group
> MMDB
Write to the Help Desk
HHS Vulnerability Disclosure