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1K9M:
Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui
PDB ID:
1K9M
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MMDB ID:
49921
PDB Deposition Date:
2001/10/29
Updated in MMDB:
2012/12
Experimental Method:
x-ray diffraction
Resolution:
3 Å
Source Organism:
Haloarcula marismortui
Similar Structures:
VAST+
Download sequence data
Biological Unit for 1K9M: 30-meric; determined by author
Molecular Components in 1K9M
Label
Count
Molecule
Proteins (28 molecules)
C
1
Ribosomal Protein L2
(Gene symbol:
RR_RS11185
)
D
1
Ribosomal Protein L3
(Gene symbol:
rpl3p
)
E
1
Ribosomal Protein L4
(Gene symbol:
rpl4p
)
F
1
Ribosomal Protein L5
(Gene symbol:
RR_RS11135
)
G
1
Ribosomal Protein L6
(Gene symbol:
RR_RS11120
)
H
1
Ribosomal Protein L7ae
(Gene symbol:
RR_RS04485
)
I
1
Ribosomal Protein L10
(Gene symbol:
RR_RS10280
)
J
1
Ribosomal Protein L10e
K
1
Ribosomal Protein L13
(Gene symbol:
RR_RS04320
)
L
1
Ribosomal Protein L14
(Gene symbol:
RR_RS11150
)
M
1
Ribosomal Protein L15
(Gene symbol:
RR_RS11090
)
N
1
Ribosomal Protein L15e
O
1
Ribosomal Protein L18
(Gene symbol:
RR_RS11105
)
P
1
Ribosomal Protein L18e
(Gene symbol:
RR_RS04315
)
Q
1
Ribosomal Protein L19e
(Gene symbol:
RR_RS11110
)
R
1
Ribosomal Protein L21e
(Gene symbol:
RR_RS05195
)
S
1
Ribosomal Protein L22
(Gene symbol:
RR_RS11175
)
T
1
Ribosomal Protein L23
(Gene symbol:
RR_RS11190
)
U
1
Ribosomal Protein L24
(Gene symbol:
RR_RS11145
)
V
1
Ribosomal Protein L24e
(Gene symbol:
RR_RS04495
)
W
1
Ribosomal Protein L29
(Gene symbol:
rpmC
)
X
1
Ribosomal Protein L30
(Gene symbol:
rpmD
)
Y
1
Ribosomal Protein L31e
(Gene symbol:
RR_RS17815
)
Z
1
Ribosomal Protein L32e
(Gene symbol:
RR_RS11115
)
1
1
Ribosomal Protein L37ae
2
1
Ribosomal Protein L37e
3
1
Ribosomal Protein L39e
(Gene symbol:
RR_RS17810
)
4
1
Ribosomal Protein L44e
(Gene symbol:
RR_RS19595
)
Nucleotides(2 molecules)
A
1
23S rRNA
B
1
5S rRNA
Chemicals and Non-standard biopolymers (235 molecules)
1
1
TYLOSIN
2
119
MAGNESIUM ION
3
85
SODIUM ION
4
22
CHLORIDE ION
5
3
POTASSIUM ION
6
5
CADMIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303