7YI4: Cryo-EM structure of Rpd3S complex bound to H3K36me3 nucleosome in close state

PDB ID: 7YI4Download
MMDB ID: 231553
PDB Deposition Date: 2022/7/14
Updated in MMDB: 2023/09
Experimental Method:
electron microscopy
Resolution: 3.96  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 7YI4: hexadecameric; determined by author
Molecular Components in 7YI4
Label Count Molecule
Proteins (14 molecules)
1
Transcriptional Regulatory Protein Sin3
Molecule annotation
1
Histone Deacetylase Rpd3
Molecule annotation
2
Chromatin Modification-related Protein Eaf3
Molecule annotation
2
Transcriptional Regulatory Protein Rco1
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A
Molecule annotation
2
Histone H2B 1.1
Molecule annotation
2
Histone H3
Molecule annotation
Nucleotides(2 molecules)
1
Wisdom 601 DNA (167-mer)
Molecule annotation
1
Wisdom 601 DNA (167-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
5
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303