National Center for
Biotechnology Information

8IPB: Wheat 80S ribosome pausing on AUG-Stop with cycloheximide

PDB ID:

8IPB Download

MMDB ID:

242997

PDB Deposition Date:

2023/3/14

Updated in MMDB:

2024/05

Experimental Method:

electron microscopy

Resolution:

3.4 Å

Source Organism:

Triticum aestivum▼

Taxonomy	Molecule
Triticum aestivum	aa, ba, ca, da, ga, ha, ia, ja, ka, la, ma, na, oa, pa, qa, ra, sa, ta, ua, va, wa, xa, ya, za, bb, cb, db, eb, fb, gb, hb, ib, AA, BA, CA, DA, EA, FA, GA, HA, IA, JA, KA, LA, MA, NA, OA, PA, QA, RA, SA, TA, UA, VA, WA, XA, YA, ZA, AB, BB, CB, DB, EB, FB, GB, HB, JB, KB, LB, MB, NB, OB, PB, RB, SB, TB, al, cl
Oryza sativa	IB

Similar Structures:

Biological Unit for 8IPB: 79-meric; determined by author

Molecular Components in 8IPB
Label	Count	Molecule
Proteins (73 molecules)
ba	1	40S Ribosomal Protein Es24
ca	1	40S Ribosomal Protein ES8
da	1	40S Ribosomal Protein Es10
ga	1	40S Ribosomal Protein Us12
ha	1	Rack1
ia	1	40S Ribosomal Protein US3
ja	1	40S Ribosomal Protein ES4
ka	1	40S Ribosomal Protein US7
la	1	40S Ribosomal Protein US9
ma	1	40S Ribosomal Protein Us10
na	1	40S Ribosomal Protein Us11
oa	1	40S Ribosomal Protein Us13
pa	1	40S Ribosomal Protein Us15
qa	1	40S Ribosomal Protein Es17
ra	1	40S Ribosomal Protein Es19
sa	1	40S Ribosomal Protein Us19
ta	1	40S Ribosomal Protein Es25
ua	1	40S Ribosomal Protein Es28
va	1	40S Ribosomal Protein US8
wa	1	40S Ribosomal Protein Us14
xa	1	40S Ribosomal Protein Es27
ya	1	40S Ribosomal Protein Es30
za	1	40S Ribosomal Protein US2
bb	1	40S Ribosomal Protein ES1
cb	1	40S Ribosomal Protein Es21
db	1	40S Ribosomal Protein Es26
eb	1	40S Ribosomal Protein US4
fb	1	40S Ribosomal Protein US5
gb	1	40S Ribosomal Protein ES6
hb	1	40S Ribosomal Protein ES7
ib	1	40S Ribosomal Protein Us17
AA	1	40S Ribosomal Protein EL8
BA	1	60S Ribosomal Protein El21
CA	1	60S Ribosomal Protein El27
DA	1	60S Ribosomal Protein UL2
EA	1	60S Ribosomal Protein UL5
FA	1	60S Ribosomal Protein UL6
GA	1	60S Ribosomal Protein Ul14
HA	1	60S Ribosomal Protein El15
IA	1	60S Ribosomal Protein Ul15
JA	1	60S Ribosomal Protein El18
KA	1	60S Ribosomal Protein Ul18
LA	1	60S Ribosomal Protein El19
MA	1	60S Ribosomal Protein Ul22
NA	1	60S Ribosomal Protein Ul23
OA	1	60S Ribosomal Protein El24
PA	1	60S Ribosomal Protein Ul24
QA	1	60S Ribosomal Protein El28
RA	1	60S Ribosomal Protein El30
SA	1	60S Ribosomal Protein El31
TA	1	60S Ribosomal Protein El32
UA	1	60S Ribosomal Protein El37
VA	1	60S Ribosomal Protein El39
WA	1	60S Ribosomal Protein El42
XA	1	60S Ribosomal Protein El14
YA	1	60S Ribosomal Protein El20
ZA	1	60S Ribosomal Protein El22
AB	1	60S Ribosomal Protein El36
BB	1	60S Ribosomal Protein Ul29
CB	1	60S Ribosomal Protein Ul30
DB	1	60S Ribosomal Protein UL3
EB	1	60S Ribosomal Protein UL4
FB	1	60S Ribosomal Protein Ul13
GB	1	60S Ribosomal Protein El43
HB	1	60S Ribosomal Protein Ul16
IB	1	60S Ribosomal Protein El41
JB	1	60S Ribosomal Protein El40
KB	1	60S Ribosomal Protein El13
LB	1	60S Ribosomal Protein EL6
MB	1	60S Ribosomal Protein El33
NB	1	60S Ribosomal Protein El38
OB	1	60S Ribosomal Protein El29
PB	1	60S Ribosomal Protein El34
Nucleotides(6 molecules)
aa	1	18S Ribosomal RNA
RB	1	60S Ribosomal RNA
SB	1	5.8s Ribosomal RNA
TB	1	5S Ribosomal RNA
al	1	mRNA
cl	1	Trnai
Chemicals and Non-standard biopolymers (270 molecules)
1	265	MAGNESIUM ION
2	4	ZINC ION
3	1	4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303