4V5Z: Structure of a mammalian 80S ribosome obtained by docking homology models of the RNA and proteins into an 8.7 A cryo-EM map

PDB ID: 4V5ZDownload
MMDB ID: 170993
PDB Deposition Date: 2008/3/27
Updated in MMDB: 2024/03
Experimental Method:
electron microscopy
Resolution: 8.7  Å
Source Organism:
Similar Structures:
Entry 2ZKR is obsolete, it has been replaced with 4V5Z.
Molecular Components in 4V5Z
Label Count Molecule
Proteins (50 molecules)
1
40S Ribosomal Protein Rack1
Molecule annotation
1
40S Ribosomal Protein SA
Molecule annotation
1
40S Ribosomal Protein S3E
Molecule annotation
1
40S Ribosomal Protein S9E
Molecule annotation
1
40S Ribosomal Protein S2E
Molecule annotation
1
40S Ribosomal Protein S5E
Molecule annotation
1
40S Ribosomal Protein S15ae
Molecule annotation
1
40S Ribosomal Protein S16e
Molecule annotation
1
40S Ribosomal Protein S20e
Molecule annotation
1
40S Ribosomal Protein S14e
Molecule annotation
1
40S Ribosomal Protein S23e
Molecule annotation
1
40S Ribosomal Protein S18e
Molecule annotation
1
40S Ribosomal Protein S29e
Molecule annotation
1
40S Ribosomal Protein S13e
Molecule annotation
1
40S Ribosomal Protein S11e
Molecule annotation
1
40S Ribosomal Protein S15e
Molecule annotation
1
60S Ribosomal Protein L8
Molecule annotation
1
60S Ribosomal Protein L3
Molecule annotation
1
60S Ribosomal Protein L4
Molecule annotation
1
60S Ribosomal Protein L11
Molecule annotation
1
60S Ribosomal Protein L9
Molecule annotation
1
60S Ribosomal Protein L7A
Molecule annotation
1
60S Acidic Ribosomal Protein P0
Molecule annotation
1
60S Ribosomal Protein L10
Molecule annotation
1
60S Ribosomal Protein L12
Molecule annotation
1
60S Ribosomal Protein L13a
Molecule annotation
1
60S Ribosomal Protein L23
Molecule annotation
1
60S Ribosomal Protein L27a
Molecule annotation
1
60S Ribosomal Protein L15e
Molecule annotation
1
60S Ribosomal Protein L5
Molecule annotation
1
60S Ribosomal Protein L18
Molecule annotation
1
60S Ribosomal Protein L19
Molecule annotation
1
60S Ribosomal Protein L19
Molecule annotation
1
60S Ribosomal Protein L21
Molecule annotation
1
60S Ribosomal Protein L17
Molecule annotation
1
60S Ribosomal Protein L23a
Molecule annotation
1
60S Ribosomal Protein L26
Molecule annotation
1
60S Ribosomal Protein L24
Molecule annotation
1
60S Ribosomal Protein L35
Molecule annotation
1
60S Ribosomal Protein L35
Molecule annotation
1
60S Ribosomal Protein L7
Molecule annotation
1
60S Ribosomal Protein L31
Molecule annotation
1
60S Ribosomal Protein L32
Molecule annotation
1
60S Ribosomal Protein L32
Molecule annotation
1
60S Ribosomal Protein L37a
Molecule annotation
1
60S Ribosomal Protein L37e
Molecule annotation
1
60S Ribosomal Protein L39e
Molecule annotation
1
60S Ribosomal Protein L44e
Molecule annotation
1
60S Ribosomal Protein L10a
Molecule annotation
1
60S Ribosomal Protein L30e
Molecule annotation
Nucleotides(36 molecules)
1
18S Ribosomal RNA
Molecule annotation
1
RNA Expansion Segment ES3
Molecule annotation
1
RNA Expansion Segment ES4
Molecule annotation
1
RNA Expansion Segment ES6 Part I
Molecule annotation
1
RNA Expansion Segment ES6 Part II
Molecule annotation
1
RNA Expansion Segment ES9
Molecule annotation
1
RNA Helix
Molecule annotation
1
RNA Helix
Molecule annotation
1
5.8s Ribosomal RNA
Molecule annotation
1
28S Ribosomal RNA
Molecule annotation
1
RNA Expansion Segment ES3
Molecule annotation
1
RNA Expansion Segment ES4
Molecule annotation
1
RNA Expansion Segment ES5
Molecule annotation
1
RNA Expansion Segment ES7 Part I
Molecule annotation
1
RNA Expansion Segment ES7 Part II
Molecule annotation
1
RNA Expansion Segment ES7 Part III
Molecule annotation
1
RNA Expansion Segment ES9
Molecule annotation
1
RNA Expansion Segment Es12
Molecule annotation
1
RNA Expansion Segment Es15 Part I
Molecule annotation
1
RNA Expansion Segment Es15 Part II
Molecule annotation
1
RNA Expansion Segment Es19
Molecule annotation
1
RNA Expansion Segment Es20
Molecule annotation
1
RNA Expansion Segment Es24
Molecule annotation
1
RNA Expansion Segment Es27
Molecule annotation
1
RNA Expansion Segment Es30
Molecule annotation
1
RNA Expansion Segment Es31 Part I
Molecule annotation
1
RNA Expansion Segment Es31 Part II
Molecule annotation
1
RNA Expansion Segment Es39 Part I
Molecule annotation
1
RNA Expansion Segment Es39 Part II
Molecule annotation
1
RNA Expansion Segment Es39 Part III
Molecule annotation
1
RNA Expansion Segment Es41
Molecule annotation
1
RNA Expansion Segment ES9 Part2
Molecule annotation
1
RNA Expansion Segment Es10
Molecule annotation
1
RNA Helices
Molecule annotation
1
5S Ribosomal RNA
Molecule annotation
1
E Site T-rna
Molecule annotation
* Click molecule labels to explore molecular sequence information.

Citing MMDB