PC-AssayDescription
Defined in file pcassay2.asn
C++ class: CPC_AssayDescription
PC-AssayDescription ::= SEQUENCE {
-- Internal/External Tracking Information
aid PC-ID, -- Assay Description ID/Version [Either valid ID
-- or, if "aid-source" is used, a "0" dummy value]
-- Note: Version is for internal use (only?)
-- Note: A valid ID is greater than "0"
aid-source PC-Source OPTIONAL, -- External Identifier for this Assay Description
-- Note: May be used in-lieu of "aid"
-- Note: This is non-optional if "aid" ID is "0"
-- Assay Description Information
name UTF8String, -- Short Assay Name (for display purposes)
description SEQUENCE OF UTF8String OPTIONAL, -- Description of Assay
protocol SEQUENCE OF UTF8String OPTIONAL, -- Procedure used to generate results
comment SEQUENCE OF UTF8String OPTIONAL, -- Comments or additional information
xref SEQUENCE OF PC-AnnotatedXRef OPTIONAL, -- Annotated Cross-Reference Information
-- Allowed Assay Result Types
results SEQUENCE OF PC-ResultType OPTIONAL, -- Result Definitions (vector)
-- Additional Information
-- pub SEQUENCE OF Pub OPTIONAL, Depositor provided publications for this assay (never used)
revision INTEGER OPTIONAL, -- Revision identifier for textual description
target SEQUENCE OF PC-AssayTargetInfo OPTIONAL, -- Target information
activity-outcome-method INTEGER { -- Assay Outcome Qualifier
other (0), -- All Other Type
screening (1), -- Primary Screen Assay
confirmatory (2), -- Confirmatory Assay
summary (3) -- Probe Summary Assay
} OPTIONAL,
dr SEQUENCE OF PC-AssayDRAttr OPTIONAL, -- Dose-Response Attribution
substance-type INTEGER {
small-molecule (1),
nucleotide (2),
other (255)
} OPTIONAL, -- to distinguish the type of substance used in the screening
-- Grant and project category information
grant-number SEQUENCE OF VisibleString OPTIONAL, -- grant proposal number
-- required for 'MLSCN' & 'MLPCN' projects
project-category INTEGER { -- to distinguish projects funded through MLSCN, MLPCN or other
mlscn (1), -- assay depositions from MLSCN screen center
mlpcn (2), -- assay depositions from MLPCN screen center
mlscn-ap (3), -- assay depositions from MLSCN assay provider
mlpcn-ap (4), -- assay depositions from MLPCN assay provider
journal-article (5), -- to be deprecated and replaced by option 7, 8 & 9
assay-vendor (6), -- assay depositions from assay vendors
literature-extracted (7), -- data from literature, extracted by curators
literature-author (8), -- data from literature, submitted by author of articles
literature-publisher (9), -- data from literature, submitted by journals/publishers
rnaigi (10), -- RNAi screenings from RNAi Global Initiative
other (255)
} OPTIONAL,
assay-group SEQUENCE OF VisibleString OPTIONAL, -- annotation for assay gruop information, e.g. this
-- assay belongs to a group of assay associated by
-- a unique name, e.g. the value assigned to 'assay-group',
-- assays belonging to this group can be
-- retrieved using this unique name
-- it is depositor's responsibility to make the name
-- distinct if necessary
-- this can be used as the mechanism to specify 'related bioassays'
-- before hand so it is not necessary to update the descriptions of
-- related assays when new group member submitted to PubChem
-- is-mlp-late-stage BOOLEAN OPTIONAL, verification for 'late-stage-data' deposition (never used)
categorized-comment SEQUENCE OF PC-CategorizedComment OPTIONAL
-- to report categorized description/comment by associating with a category title
}