Biostruc_annot_set_.hpp

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/* $Id$
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
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 *  and reliability of the software and data, the NLM and the U.S.
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 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
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/// @file Biostruc_annot_set_.hpp
/// Data storage class.
///
/// This file was generated by application DATATOOL
/// using the following specifications:
/// <a href="/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/mmdb1/mmdb1.asn">mmdb1.asn</a>
/// and additional tune-up parameters:
/// <a href="/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/mmdb1/mmdb1.def">mmdb1.def</a>
///
/// ATTENTION:
///   Don't edit or commit this file into CVS as this file will
///   be overridden (by DATATOOL) without warning!
 
#ifndef OBJECTS_MMDB1_BIOSTRUC_ANNOT_SET_BASE_HPP
#define OBJECTS_MMDB1_BIOSTRUC_ANNOT_SET_BASE_HPP
 
// standard includes
#include <serial/serialbase.hpp>
 
// generated includes
#include <list>
 
BEGIN_NCBI_SCOPE
 
#ifndef BEGIN_objects_SCOPE
#  define BEGIN_objects_SCOPE BEGIN_SCOPE(objects)
#  define END_objects_SCOPE END_SCOPE(objects)
#endif
BEGIN_objects_SCOPE // namespace ncbi::objects::
 
 
// forward declarations
class CBiostruc_descr;
class CBiostruc_feature_set;
class CBiostruc_id;
 
 
// generated classes
 
 
/** @addtogroup dataspec_MMDB
 *
 * @{
 */
 
/////////////////////////////////////////////////////////////////////////////
/// A biostruc annotation set is a means to collect ASN.1 data for biostruc
/// features into one file. The object type is intended as a means to store 
/// feature annotation of similar type, such as "core" definitions for a 
/// threading program, or structure-structure alignments for a structure-
/// similarity browser.
///
/// CBiostruc_annot_set_Base --
///
 
class NCBI_MMDB1_EXPORT CBiostruc_annot_set_Base : public CSerialObject
{
    typedef CSerialObject Tparent;
public:
    // constructor
    CBiostruc_annot_set_Base(void);
    // destructor
    virtual ~CBiostruc_annot_set_Base(void);
 
    // type info
    DECLARE_INTERNAL_TYPE_INFO();
 
    // types
    typedef list< CRef< CBiostruc_id > > TId;
    typedef list< CRef< CBiostruc_descr > > TDescr;
    typedef list< CRef< CBiostruc_feature_set > > TFeatures;
 
    // member index
    enum class E_memberIndex {
        e__allMandatory = 0,
        e_id,
        e_descr,
        e_features
    };
    typedef Tparent::CMemberIndex<E_memberIndex, 4> TmemberIndex;
 
    // getters
    // setters
 
    /// Check if a value has been assigned to Id data member.
    ///
    /// Data member Id is optional;
    /// its type is defined as 'typedef list< CRef< CBiostruc_id > > TId'
    /// @return
    ///   - true, if a value has been assigned.
    ///   - false, otherwise.
    bool IsSetId(void) const;
 
    /// Check if it is safe to call GetId method.
    ///
    /// @return
    ///   - true, if the data member is getatable.
    ///   - false, otherwise.
    bool CanGetId(void) const;
 
    /// Reset Id data member.
    void ResetId(void);
 
    /// Get the Id member data.
    ///
    /// @return
    ///   Reference to the member data.
    const TId& GetId(void) const;
 
    /// Assign a value to Id data member.
    ///
    /// @return
    ///   Reference to the data value.
    TId& SetId(void);
 
    /// Check if a value has been assigned to Descr data member.
    ///
    /// Data member Descr is optional;
    /// its type is defined as 'typedef list< CRef< CBiostruc_descr > > TDescr'
    /// @return
    ///   - true, if a value has been assigned.
    ///   - false, otherwise.
    bool IsSetDescr(void) const;
 
    /// Check if it is safe to call GetDescr method.
    ///
    /// @return
    ///   - true, if the data member is getatable.
    ///   - false, otherwise.
    bool CanGetDescr(void) const;
 
    /// Reset Descr data member.
    void ResetDescr(void);
 
    /// Get the Descr member data.
    ///
    /// @return
    ///   Reference to the member data.
    const TDescr& GetDescr(void) const;
 
    /// Assign a value to Descr data member.
    ///
    /// @return
    ///   Reference to the data value.
    TDescr& SetDescr(void);
 
    /// Check if a value has been assigned to Features data member.
    ///
    /// Data member Features is mandatory;
    /// its type is defined as 'typedef list< CRef< CBiostruc_feature_set > > TFeatures'
    /// @return
    ///   - true, if a value has been assigned.
    ///   - false, otherwise.
    bool IsSetFeatures(void) const;
 
    /// Check if it is safe to call GetFeatures method.
    ///
    /// @return
    ///   - true, if the data member is getatable.
    ///   - false, otherwise.
    bool CanGetFeatures(void) const;
 
    /// Reset Features data member.
    void ResetFeatures(void);
 
    /// Get the Features member data.
    ///
    /// @return
    ///   Reference to the member data.
    const TFeatures& GetFeatures(void) const;
 
    /// Assign a value to Features data member.
    ///
    /// @return
    ///   Reference to the data value.
    TFeatures& SetFeatures(void);
 
    /// Reset the whole object
    virtual void Reset(void);
 
 
private:
    // Prohibit copy constructor and assignment operator
    CBiostruc_annot_set_Base(const CBiostruc_annot_set_Base&);
    CBiostruc_annot_set_Base& operator=(const CBiostruc_annot_set_Base&);
 
    // data
    Uint4 m_set_State[1];
    list< CRef< CBiostruc_id > > m_Id;
    list< CRef< CBiostruc_descr > > m_Descr;
    list< CRef< CBiostruc_feature_set > > m_Features;
};
 
/* @} */
 
 
 
 
 
///////////////////////////////////////////////////////////
///////////////////// inline methods //////////////////////
///////////////////////////////////////////////////////////
inline
bool CBiostruc_annot_set_Base::IsSetId(void) const
{
    return ((m_set_State[0] & 0x3) != 0);
}
 
inline
bool CBiostruc_annot_set_Base::CanGetId(void) const
{
    return true;
}
 
inline
const CBiostruc_annot_set_Base::TId& CBiostruc_annot_set_Base::GetId(void) const
{
    return m_Id;
}
 
inline
CBiostruc_annot_set_Base::TId& CBiostruc_annot_set_Base::SetId(void)
{
    m_set_State[0] |= 0x1;
    return m_Id;
}
 
inline
bool CBiostruc_annot_set_Base::IsSetDescr(void) const
{
    return ((m_set_State[0] & 0xc) != 0);
}
 
inline
bool CBiostruc_annot_set_Base::CanGetDescr(void) const
{
    return true;
}
 
inline
const CBiostruc_annot_set_Base::TDescr& CBiostruc_annot_set_Base::GetDescr(void) const
{
    return m_Descr;
}
 
inline
CBiostruc_annot_set_Base::TDescr& CBiostruc_annot_set_Base::SetDescr(void)
{
    m_set_State[0] |= 0x4;
    return m_Descr;
}
 
inline
bool CBiostruc_annot_set_Base::IsSetFeatures(void) const
{
    return ((m_set_State[0] & 0x30) != 0);
}
 
inline
bool CBiostruc_annot_set_Base::CanGetFeatures(void) const
{
    return true;
}
 
inline
const CBiostruc_annot_set_Base::TFeatures& CBiostruc_annot_set_Base::GetFeatures(void) const
{
    return m_Features;
}
 
inline
CBiostruc_annot_set_Base::TFeatures& CBiostruc_annot_set_Base::SetFeatures(void)
{
    m_set_State[0] |= 0x10;
    return m_Features;
}
 
///////////////////////////////////////////////////////////
////////////////// end of inline methods //////////////////
///////////////////////////////////////////////////////////
 
 
 
 
 
END_objects_SCOPE // namespace ncbi::objects::
 
END_NCBI_SCOPE
 
 
#endif // OBJECTS_MMDB1_BIOSTRUC_ANNOT_SET_BASE_HPP