NCBI C++ ToolKit
NCBI4na_.hpp
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27 
28 /// @file NCBI4na_.hpp
29 /// Data storage class.
30 ///
31 /// This file was generated by application DATATOOL
32 /// using the following specifications:
33 /// <a href="/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/seq/seq.asn">seq.asn</a>
34 /// and additional tune-up parameters:
35 /// <a href="/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/seq/seq.def">seq.def</a>
36 ///
37 /// ATTENTION:
38 /// Don't edit or commit this file into CVS as this file will
39 /// be overridden (by DATATOOL) without warning!
40 
41 #ifndef OBJECTS_SEQ_NCBI4NA_BASE_HPP
42 #define OBJECTS_SEQ_NCBI4NA_BASE_HPP
43 
44 // standard includes
45 #include <serial/serialbase.hpp>
46 
47 // generated includes
48 #include <vector>
49 
51 
52 #ifndef BEGIN_objects_SCOPE
53 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects)
54 # define END_objects_SCOPE END_SCOPE(objects)
55 #endif
56 BEGIN_objects_SCOPE // namespace ncbi::objects::
57 
58 
59 // generated classes
60 
61 
62 /** @addtogroup dataspec_NCBI_Sequence
63  *
64  * @{
65  */
66 
67 /////////////////////////////////////////////////////////////////////////////
68 /// 1 bit each for agct
69 /// 0001=A, 0010=C, 0100=G, 1000=T/U
70 /// 0101=Purine, 1010=Pyrimidine, etc
71 ///
72 /// CNCBI4na_Base --
73 ///
74 
75 class NCBI_SEQ_EXPORT CNCBI4na_Base : public CStringAliasBase< vector< char > >
76 {
78 public:
79  CNCBI4na_Base(void);
80 
81  // type info
83 
84  // explicit constructor from the primitive type
85  explicit CNCBI4na_Base(const vector< char >& data);
86 };
87 
88 /* @} */
89 
90 
91 
92 
93 
94 ///////////////////////////////////////////////////////////
95 ///////////////////// inline methods //////////////////////
96 ///////////////////////////////////////////////////////////
97 inline
99 {
100 }
101 
102 inline
103 CNCBI4na_Base::CNCBI4na_Base(const vector< char >& data)
104  : CStringAliasBase< vector< char > >(data)
105 {
106 }
107 
108 inline
111 {
112  return WriteObject(str,&obj,obj.GetTypeInfo());
113 }
114 
115 inline
118 {
119  return ReadObject(str,&obj,obj.GetTypeInfo());
120 }
121 
122 ///////////////////////////////////////////////////////////
123 ////////////////// end of inline methods //////////////////
124 ///////////////////////////////////////////////////////////
125 
126 
127 
128 
129 
130 END_objects_SCOPE // namespace ncbi::objects::
131 
133 
134 
135 #endif // OBJECTS_SEQ_NCBI4NA_BASE_HPP
1 bit each for agct 0001=A, 0010=C, 0100=G, 1000=T/U 0101=Purine, 1010=Pyrimidine,...
Definition: NCBI4na_.hpp:76
static const char * str(char *buf, int n)
Definition: stats.c:84
char data[12]
Definition: iconv.c:80
CNcbiIstream & ReadObject(CNcbiIstream &str, TObjectPtr ptr, TTypeInfo info)
CNcbiOstream & WriteObject(CNcbiOstream &str, TConstObjectPtr ptr, TTypeInfo info)
#define END_NCBI_SCOPE
End previously defined NCBI scope.
Definition: ncbistl.hpp:103
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
Definition: ncbistl.hpp:100
IO_PREFIX::ostream CNcbiOstream
Portable alias for ostream.
Definition: ncbistre.hpp:149
IO_PREFIX::istream CNcbiIstream
Portable alias for istream.
Definition: ncbistre.hpp:146
#define NCBI_SEQ_EXPORT
Definition: ncbi_export.h:825
DECLARE_STD_ALIAS_TYPE_INFO()
CStringAliasBase< vector< char > > Tparent
Definition: NCBI4na_.hpp:77
CNCBI4na_Base(void)
Definition: NCBI4na_.hpp:98
Modified on Sat Jun 22 10:41:36 2024 by modify_doxy.py rev. 669887