NCBI4na_.hpp

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/* $Id$
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
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 *  and reliability of the software and data, the NLM and the U.S.
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 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
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/// @file NCBI4na_.hpp
/// Data storage class.
///
/// This file was generated by application DATATOOL
/// using the following specifications:
/// <a href="/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/seq/seq.asn">seq.asn</a>
/// and additional tune-up parameters:
/// <a href="/IEB/ToolBox/CPP_DOC/lxr/source/src/objects/seq/seq.def">seq.def</a>
///
/// ATTENTION:
///   Don't edit or commit this file into CVS as this file will
///   be overridden (by DATATOOL) without warning!
 
#ifndef OBJECTS_SEQ_NCBI4NA_BASE_HPP
#define OBJECTS_SEQ_NCBI4NA_BASE_HPP
 
// standard includes
#include <serial/serialbase.hpp>
 
// generated includes
#include <vector>
 
BEGIN_NCBI_SCOPE
 
#ifndef BEGIN_objects_SCOPE
#  define BEGIN_objects_SCOPE BEGIN_SCOPE(objects)
#  define END_objects_SCOPE END_SCOPE(objects)
#endif
BEGIN_objects_SCOPE // namespace ncbi::objects::
 
 
// generated classes
 
 
/** @addtogroup dataspec_NCBI_Sequence
 *
 * @{
 */
 
/////////////////////////////////////////////////////////////////////////////
/// 1 bit each for agct
/// 0001=A, 0010=C, 0100=G, 1000=T/U
/// 0101=Purine, 1010=Pyrimidine, etc
///
/// CNCBI4na_Base --
///
 
class NCBI_SEQ_EXPORT CNCBI4na_Base : public CStringAliasBase< vector< char > >
{
    typedef CStringAliasBase< vector< char > > Tparent;
public:
    CNCBI4na_Base(void);
 
    // type info
    DECLARE_STD_ALIAS_TYPE_INFO();
 
    // explicit constructor from the primitive type
    explicit CNCBI4na_Base(const vector< char >& data);
};
 
/* @} */
 
 
 
 
 
///////////////////////////////////////////////////////////
///////////////////// inline methods //////////////////////
///////////////////////////////////////////////////////////
inline
CNCBI4na_Base::CNCBI4na_Base(void)
{
}
 
inline
CNCBI4na_Base::CNCBI4na_Base(const vector< char >& data)
    : CStringAliasBase< vector< char > >(data)
{
}
 
inline
NCBI_NS_NCBI::CNcbiOstream& operator<<
(NCBI_NS_NCBI::CNcbiOstream& str, const CNCBI4na_Base& obj)
{
    return WriteObject(str,&obj,obj.GetTypeInfo());
}
 
inline
NCBI_NS_NCBI::CNcbiIstream& operator>>
(NCBI_NS_NCBI::CNcbiIstream& str, CNCBI4na_Base& obj)
{
    return ReadObject(str,&obj,obj.GetTypeInfo());
}
 
///////////////////////////////////////////////////////////
////////////////// end of inline methods //////////////////
///////////////////////////////////////////////////////////
 
 
 
 
 
END_objects_SCOPE // namespace ncbi::objects::
 
END_NCBI_SCOPE
 
 
#endif // OBJECTS_SEQ_NCBI4NA_BASE_HPP