Variation_ref_.cpp File Reference

#include <ncbi_pch.hpp>
#include <serial/serialimpl.hpp>
#include <objects/seqfeat/Variation_ref.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/general/User_object.hpp>
#include <objects/pub/Pub.hpp>
#include <objects/seqfeat/Ext_loc.hpp>
#include <objects/seqfeat/Phenotype.hpp>
#include <objects/seqfeat/Population_data.hpp>
#include <objects/seqfeat/SubSource.hpp>
#include <objects/seqfeat/VariantProperties.hpp>
#include <objects/seqfeat/Variation_inst.hpp>
#include <objects/seqloc/Seq_loc.hpp>

Include dependency graph for Variation_ref_.cpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Functions
	BEGIN_NAMED_ENUM_IN_INFO ("", CVariation_ref_Base::, EMethod_E, true)
END_ENUM_INFO	BEGIN_NAMED_ENUM_IN_INFO ("", CVariation_ref_Base::, EAllele_origin, true)
END_ENUM_INFO	BEGIN_NAMED_ENUM_IN_INFO ("", CVariation_ref_Base::, EAllele_state, true)
END_ENUM_INFO	BEGIN_NAMED_ENUM_IN_INFO ("", CVariation_ref_Base::C_Data::C_Set::, EData_set_type, true)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_ref_Base::C_Data::C_Set)
	BEGIN_NAMED_CHOICE_INFO ("", CVariation_ref_Base::C_Data)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_ref_Base::C_E_Consequence::C_Frameshift)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity)
	BEGIN_NAMED_CHOICE_INFO ("", CVariation_ref_Base::C_E_Consequence)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_ref_Base::C_E_Somatic_origin::C_Condition)
	BEGIN_NAMED_CLASS_INFO ("", CVariation_ref_Base::C_E_Somatic_origin)
	BEGIN_NAMED_BASE_CLASS_INFO ("Variation-ref", CVariation_ref)

Function Documentation

BEGIN_NAMED_BASE_CLASS_INFO()

BEGIN_NAMED_BASE_CLASS_INFO	(	"Variation-ref"	,
		CVariation_ref
	)

Definition at line 905 of file Variation_ref_.cpp.

References ADD_NAMED_ENUM_MEMBER, ADD_NAMED_MEMBER, ADD_NAMED_REF_MEMBER, ADD_NAMED_STD_MEMBER, info, CVariation_ref_Base::m_Allele_frequency, CVariation_ref_Base::m_Allele_origin, CVariation_ref_Base::m_Allele_state, CVariation_ref_Base::m_Clinical_test, CVariation_ref_Base::m_Consequence, CVariation_ref_Base::m_Data, CVariation_ref_Base::m_Description, CVariation_ref_Base::m_Ext, CVariation_ref_Base::m_Ext_locs, CVariation_ref_Base::m_Id, CVariation_ref_Base::m_Is_ancestral_allele, CVariation_ref_Base::m_Location, CVariation_ref_Base::m_Method, CVariation_ref_Base::m_Name, CVariation_ref_Base::m_Other_ids, CVariation_ref_Base::m_Parent_id, CVariation_ref_Base::m_Phenotype, CVariation_ref_Base::m_Population_data, CVariation_ref_Base::m_Pub, CVariation_ref_Base::m_Sample_id, CVariation_ref_Base::m_set_State, CVariation_ref_Base::m_Somatic_origin, CVariation_ref_Base::m_Synonyms, CVariation_ref_Base::m_Validated, CVariation_ref_Base::m_Variant_prop, MEMBER_PTR, SET_CLASS_MODULE, and STD.

BEGIN_NAMED_CHOICE_INFO() [1/2]

BEGIN_NAMED_CHOICE_INFO	(	""	,
		CVariation_ref_Base::C_Data
	)

Definition at line 304 of file Variation_ref_.cpp.

References ADD_NAMED_BUF_CHOICE_VARIANT, ADD_NAMED_NULL_CHOICE_VARIANT, ADD_NAMED_REF_CHOICE_VARIANT, info, CVariation_ref_Base::C_Data::m_object, CVariation_ref_Base::C_Data::m_string, SET_CHOICE_MODULE, SET_INTERNAL_NAME, and STD.

BEGIN_NAMED_CHOICE_INFO() [2/2]

BEGIN_NAMED_CHOICE_INFO	(	""	,
		CVariation_ref_Base::C_E_Consequence
	)

Definition at line 544 of file Variation_ref_.cpp.

References ADD_NAMED_BUF_CHOICE_VARIANT, ADD_NAMED_NULL_CHOICE_VARIANT, ADD_NAMED_REF_CHOICE_VARIANT, info, CVariation_ref_Base::C_E_Consequence::m_object, CVariation_ref_Base::C_E_Consequence::m_string, SET_CHOICE_MODULE, SET_INTERNAL_NAME, and STD.

BEGIN_NAMED_CLASS_INFO() [1/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_ref_Base::C_Data::C_Set
	)

Definition at line 165 of file Variation_ref_.cpp.

References ADD_NAMED_ENUM_MEMBER, ADD_NAMED_MEMBER, ADD_NAMED_STD_MEMBER, info, CVariation_ref_Base::m_Name, CVariation_ref_Base::m_set_State, MEMBER_PTR, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_CLASS_INFO() [2/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_ref_Base::C_E_Consequence::C_Frameshift
	)

Definition at line 338 of file Variation_ref_.cpp.

References ADD_NAMED_STD_MEMBER, info, CVariation_ref_Base::m_set_State, MEMBER_PTR, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_CLASS_INFO() [3/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_ref_Base::C_E_Consequence::C_Loss_of_heterozygosity
	)

Definition at line 381 of file Variation_ref_.cpp.

References ADD_NAMED_STD_MEMBER, info, CVariation_ref_Base::m_set_State, MEMBER_PTR, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_CLASS_INFO() [4/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_ref_Base::C_E_Somatic_origin
	)

Definition at line 654 of file Variation_ref_.cpp.

References ADD_NAMED_REF_MEMBER, info, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_CLASS_INFO() [5/5]

BEGIN_NAMED_CLASS_INFO	(	""	,
		CVariation_ref_Base::C_E_Somatic_origin::C_Condition
	)

Definition at line 590 of file Variation_ref_.cpp.

References ADD_NAMED_MEMBER, ADD_NAMED_STD_MEMBER, info, CVariation_ref_Base::m_Description, CVariation_ref_Base::m_set_State, MEMBER_PTR, SET_CLASS_MODULE, and SET_INTERNAL_NAME.

BEGIN_NAMED_ENUM_IN_INFO() [1/4]

END_ENUM_INFO BEGIN_NAMED_ENUM_IN_INFO	(	""	,
		CVariation_ref_Base::	,
		EAllele_origin	,
		true
	)

Definition at line 96 of file Variation_ref_.cpp.

References ADD_ENUM_VALUE, SET_ENUM_INTERNAL_NAME, and SET_ENUM_MODULE.

BEGIN_NAMED_ENUM_IN_INFO() [2/4]

END_ENUM_INFO BEGIN_NAMED_ENUM_IN_INFO	(	""	,
		CVariation_ref_Base::	,
		EAllele_state	,
		true
	)

Definition at line 115 of file Variation_ref_.cpp.

References ADD_ENUM_VALUE, SET_ENUM_INTERNAL_NAME, and SET_ENUM_MODULE.

BEGIN_NAMED_ENUM_IN_INFO() [3/4]

BEGIN_NAMED_ENUM_IN_INFO	(	""	,
		CVariation_ref_Base::	,
		EMethod_E	,
		true
	)

Definition at line 61 of file Variation_ref_.cpp.

References ADD_ENUM_VALUE, SET_ENUM_INTERNAL_NAME, and SET_ENUM_MODULE.

BEGIN_NAMED_ENUM_IN_INFO() [4/4]

END_ENUM_INFO BEGIN_NAMED_ENUM_IN_INFO	(	""	,
		CVariation_ref_Base::C_Data::C_Set::	,
		EData_set_type	,
		true
	)

Definition at line 128 of file Variation_ref_.cpp.

References ADD_ENUM_VALUE, SET_ENUM_INTERNAL_NAME, and SET_ENUM_MODULE.