Search Toolkit Book for CBioTree
Basic tree structure for biological applications. More...
#include <algo/phy_tree/bio_tree.hpp>
Inheritance diagram for CBioTree< TBioNode >:
Collaboration diagram for CBioTree< TBioNode >:
Classes | |
| struct | CAssignTreeFunc |
| Functor to reset tree pointer in all nodes. More... | |
| class | CBioNode |
| class | CFindUidFunc |
| Find node by UID functor. More... | |
Public Types | |
| typedef CBioTree< TBioNode > | TBioTree |
| typedef CBioNode | TBioTreeNode |
| Biotree node (forms the tree hierarchy) More... | |
| typedef TBioNode | TBioNodeType |
Public Member Functions | |
| CBioTree () | |
| virtual | ~CBioTree () |
| CBioTree (const CBioTree< TBioNode > &btr) | |
| CBioTree< TBioNode > & | operator= (const CBioTree< TBioNode > &btr) |
| const TBioTreeNode * | FindNode (TBioTreeNodeId node_id) const |
| Finds node by id. More... | |
| void | AddFeature (TBioTreeNode *node, TBioTreeFeatureId feature_id, const string &feature_value) |
| Add feature to the tree node Function controls that the feature is registered in the feature dictionary of this tree. More... | |
| void | AddFeature (TBioTreeNode *node, const string &feature_name, const string &feature_value) |
| Add feature to the tree node Function controls that the feature is registered in the feature dictionary of this tree. More... | |
| virtual TBioTreeNodeId | GetNodeId () |
| Get new unique node id. More... | |
| virtual TBioTreeNodeId | GetNodeId (const TBioTreeNode &) |
| Get new unique node id (for cases when node id depends on the node's content. More... | |
| void | SetNodeId (TBioTreeNode *node) |
| Assign new unique node id to the node. More... | |
| void | SetTreeNode (TBioTreeNode *node) |
| Assign new top level tree node. More... | |
| const TBioTreeNode * | GetTreeNode () const |
| TBioTreeNode * | GetTreeNodeNonConst () |
| void | DetachTreeNode () |
| TBioTreeNode * | AddNode (const TBioNodeType &node_value, TBioTreeNodeId parent_id) |
| Add node to the tree (node location is defined by the parent id. More... | |
| TBioTreeNode * | AddNode (const TBioNodeType &node_value, TBioTreeNode *parent_node) |
| Add a node to the tree when you have already looked up the parent node (faster) More... | |
| void | SetParentTree (CBioNode &node) |
| Recursively set this tree as parent tree for the node. More... | |
| void | SetParentTree (CBioNode &node, CBioTree *tr) |
| Recursively set parent tree for the node. More... | |
| void | Clear () |
| Clear the bio tree. More... | |
| CBioTreeFeatureDictionary & | GetFeatureDict () |
| Return feature dictionary. More... | |
| const CBioTreeFeatureDictionary & | GetFeatureDict () const |
| Return feature dictionary. More... | |
Protected Attributes | |
| CBioTreeFeatureDictionary | m_FeatureDict |
| TBioTreeNodeId | m_NodeIdCounter |
| unique_ptr< TBioTreeNode > | m_TreeNode |
| Top level node. More... | |
Detailed Description
template<class TBioNode>
class CBioTree< TBioNode >
Basic tree structure for biological applications.
Definition at line 231 of file bio_tree.hpp.
The documentation for this class was generated from the following file:
- include/algo/phy_tree/bio_tree.hpp
