CDiagHit Class Reference

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#include <gui/widgets/hit_matrix/diag_hit.hpp>

Inheritance diagram for CDiagHit:

Collaboration diagram for CDiagHit:

Public Types
typedef list< CRef< objects::CScore > >	TScore
typedef CDiagHitElement::TRange	TRange
typedef CDiagHitElement::TAlnRange	TAlnRange
Public Types inherited from IHit
typedef IHitElement::TDim	TDim
typedef CAlnUserOptions::EDirection	TDirection

Public Member Functions
	CDiagHit (const objects::CSeq_align &seq_align, const CPairwiseAln &pr_align)
	CDiagHit. More...
virtual	~CDiagHit ()
virtual TDim	GetElemsCount () const
virtual const IHitElement &	GetElem (TDim elem_index) const
virtual double	GetScoreValue (const string &score_name) const
virtual const objects::CSeq_align *	GetSeqAlign () const
Public Member Functions inherited from IHit
virtual	~IHit ()

Protected Types
typedef vector< CDiagHitElement >	TElements

Protected Member Functions
const CPairwiseAln &	x_GetAln () const

Protected Attributes
const objects::CSeq_align *	m_SeqAlign
CConstRef< CPairwiseAln >	m_Aln
TElements	m_Elements

Friends
class	CDiagHitElement

Detailed Description

Definition at line 86 of file diag_hit.hpp.

Member Typedef Documentation

TAlnRange

typedef CDiagHitElement::TAlnRange CDiagHit::TAlnRange

Definition at line 93 of file diag_hit.hpp.

TElements

typedef vector<CDiagHitElement> CDiagHit::TElements

protected

Definition at line 108 of file diag_hit.hpp.

TRange

typedef CDiagHitElement::TRange CDiagHit::TRange

Definition at line 92 of file diag_hit.hpp.

TScore

typedef list< CRef< objects::CScore > > CDiagHit::TScore

Definition at line 91 of file diag_hit.hpp.

Constructor & Destructor Documentation

CDiagHit()

CDiagHit::CDiagHit	(	const objects::CSeq_align &	seq_align,
		const CPairwiseAln &	pr_align
	)

CDiagHit.

Definition at line 80 of file diag_hit.cpp.

References i, m_Elements, n, and CAlignRangeCollectionList< TAlnRange >::size().

~CDiagHit()

CDiagHit::~CDiagHit ( )

virtual

Definition at line 92 of file diag_hit.cpp.

Member Function Documentation

GetElem()

const IHitElement & CDiagHit::GetElem ( TDim  elem_index ) const

virtual

Implements IHit.

Definition at line 103 of file diag_hit.cpp.

References _ASSERT, and m_Elements.

GetElemsCount()

CDiagHit::TDim CDiagHit::GetElemsCount ( ) const

virtual

Implements IHit.

Definition at line 97 of file diag_hit.cpp.

References m_Elements.

GetScoreValue()

double CDiagHit::GetScoreValue ( const string &  score_name ) const

virtual

Implements IHit.

Definition at line 110 of file diag_hit.cpp.

References _ASSERT, ITERATE, m_SeqAlign, and val.

GetSeqAlign()

const objects::CSeq_align * CDiagHit::GetSeqAlign ( void  ) const

virtual

Implements IHit.

Definition at line 131 of file diag_hit.cpp.

References m_SeqAlign.

x_GetAln()

const CPairwiseAln& CDiagHit::x_GetAln ( ) const

inlineprotected

Definition at line 105 of file diag_hit.hpp.

References m_Aln.

Referenced by CDiagHitElement::x_GetAlnRange().

Friends And Related Function Documentation

CDiagHitElement

friend class CDiagHitElement

friend

Definition at line 89 of file diag_hit.hpp.

Member Data Documentation

m_Aln

CConstRef<CPairwiseAln> CDiagHit::m_Aln

protected

Definition at line 111 of file diag_hit.hpp.

Referenced by x_GetAln().

m_Elements

TElements CDiagHit::m_Elements

protected

Definition at line 112 of file diag_hit.hpp.

Referenced by CDiagHit(), GetElem(), and GetElemsCount().

m_SeqAlign

const objects::CSeq_align* CDiagHit::m_SeqAlign

protected

Definition at line 110 of file diag_hit.hpp.

Referenced by GetScoreValue(), and GetSeqAlign().

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The documentation for this class was generated from the following files:

• include/gui/widgets/hit_matrix/diag_hit.hpp
• src/gui/widgets/hit_matrix/diag_hit.cpp