CProjectFileWriter Class Reference

Search Toolkit Book for CProjectFileWriter

#include "projectfilewriter.hpp"
(Private to src/gui/app/project_tools.)

Collaboration diagram for CProjectFileWriter:

Public Types
typedef CFormatGuess::EFormat	EFormat

Public Member Functions
	CProjectFileWriter (CRef< CScope > tScope)
void	AddToScope (CConstRef< CSerialObject > Object)
bool	WriteFile (const string &Filename, CConstRef< CSerialObject > Object, EFormat Format)

Private Member Functions
bool	x_WriteFile (CNcbiOstream &Out, CConstRef< CSerialObject > Object, EFormat Format)
bool	x_WriteObject (CNcbiOstream &Out, CConstRef< CSerialObject > Object, ESerialDataFormat Format)
bool	x_WriteGtf (CNcbiOstream &Out, CConstRef< CSerialObject > Object)
TGi	x_FindParent (TGi Gi)
TGi	x_GetAnnotId (CConstRef< CSeq_annot > Annot)
TGi	x_GetGi (CConstRef< CSeq_id > Id)

Private Attributes
CRef< CScope >	Scope

Detailed Description

Definition at line 51 of file projectfilewriter.hpp.

Member Typedef Documentation

EFormat

typedef CFormatGuess::EFormat CProjectFileWriter::EFormat

Definition at line 54 of file projectfilewriter.hpp.

Constructor & Destructor Documentation

CProjectFileWriter()

CProjectFileWriter::CProjectFileWriter

(

CRef< CScope >

tScope

)

Definition at line 91 of file projectfilewriter.cpp.

Member Function Documentation

AddToScope()

void CProjectFileWriter::AddToScope

(

CConstRef< CSerialObject >

Object

)

Definition at line 97 of file projectfilewriter.cpp.

References CScope::AddBioseq(), CScope::AddSeq_annot(), CScope::AddTopLevelSeqEntry(), CSimpleOM::GetBioseqHandle(), CConstRef< C, Locker >::GetPointer(), CSerialObject::GetThisTypeInfo(), Handle, and Scope.

WriteFile()

bool CProjectFileWriter::WriteFile	(	const string &	Filename,
		CConstRef< CSerialObject >	Object,
		EFormat	Format
	)

Definition at line 116 of file projectfilewriter.cpp.

References out(), Out(), and x_WriteFile().

x_FindParent()

TGi CProjectFileWriter::x_FindParent ( TGi  Gi )

private

Definition at line 215 of file projectfilewriter.cpp.

References CScope::eManualTSEs, CSeqMap::eSeqEnd, CSeqMap::eSeqRef, CScope::GetAllTSEs(), Handle, ITERATE, Map(), NULL, Scope, SSeqMapSelector::SetRange(), x_GetGi(), and ZERO_GI.

x_GetAnnotId()

TGi CProjectFileWriter::x_GetAnnotId ( CConstRef< CSeq_annot >  Annot )

private

Definition at line 254 of file projectfilewriter.cpp.

References CSeq_annot_Base::GetData(), CSeq_annot_Base::C_Data::GetFtable(), CSeq_loc::GetId(), CSeq_feat_Base::GetLocation(), ITERATE, x_GetGi(), and ZERO_GI.

x_GetGi()

TGi CProjectFileWriter::x_GetGi ( CConstRef< CSeq_id >  Id )

private

Definition at line 270 of file projectfilewriter.cpp.

References CSeq_id_Base::e_Gi, CScope::GetBioseqHandle(), CSeq_id_Base::GetGi(), CSeq_id_Handle::GetSeqId(), Handle, ITERATE, Scope, CSeq_id_Base::Which(), and ZERO_GI.

Referenced by x_FindParent(), and x_GetAnnotId().

x_WriteFile()

bool CProjectFileWriter::x_WriteFile ( CNcbiOstream &  Out, CConstRef< CSerialObject >  Object, EFormat  Format  )

private

Definition at line 130 of file projectfilewriter.cpp.

References CFormatGuess::eBinaryASN, CFormatGuess::eGtf, eSerial_AsnBinary, eSerial_AsnText, eSerial_Xml, CFormatGuess::eTextASN, eUnknown, CFormatGuess::eUnknown, CFormatGuess::eXml, NCBI_THROW, Out(), x_WriteGtf(), and x_WriteObject().

Referenced by WriteFile().

x_WriteGtf()

bool CProjectFileWriter::x_WriteGtf ( CNcbiOstream &  Out, CConstRef< CSerialObject >  Object  )

private

Definition at line 187 of file projectfilewriter.cpp.

References eSerial_Xml, CScope::GetBioseqHandle(), CSeq_id_Handle::GetHandle(), CConstRef< C, Locker >::GetPointer(), CScope::GetSeq_annotHandle(), CSerialObject::GetThisTypeInfo(), Out(), Scope, CGff2Writer::WriteBioseqHandle(), CGff2Writer::WriteFooter(), CGtfWriter::WriteHeader(), CGff2Writer::WriteSeqAnnotHandle(), and x_WriteObject().

Referenced by x_WriteFile().

x_WriteObject()

bool CProjectFileWriter::x_WriteObject ( CNcbiOstream &  Out, CConstRef< CSerialObject >  Object, ESerialDataFormat  Format  )

private

Definition at line 171 of file projectfilewriter.cpp.

References Error(), LOG_POST, CObjectOStream::Open(), and Out().

Referenced by x_WriteFile(), and x_WriteGtf().

Member Data Documentation

Scope

CRef<CScope> CProjectFileWriter::Scope

private

Definition at line 65 of file projectfilewriter.hpp.

Referenced by AddToScope(), x_FindParent(), x_GetGi(), and x_WriteGtf().

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The documentation for this class was generated from the following files:

• src/gui/app/project_tools/projectfilewriter.hpp
• src/gui/app/project_tools/projectfilewriter.cpp