#include <ncbi_pch.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <objects/seqalign/Score.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/util/create_defline.hpp>
#include <objtools/alnmgr/alnmap.hpp>
#include <objects/seqalign/Product_pos.hpp>
#include <objects/seqalign/Spliced_seg.hpp>
#include <objects/seqalign/Spliced_exon.hpp>
#include <objects/seqalign/Spliced_exon_chunk.hpp>
#include <objects/seqalign/Score_set.hpp>
#include <objects/seqfeat/Org_ref.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <objtools/writers/gff3flybase_writer.hpp>
#include <objects/seqalign/Prot_pos.hpp>

Include dependency graph for gff3flybase_writer.cpp:

Go to the SVN repository for this file.

Classes
struct	SFlybaseCompareAlignments

Macros
#define	INSERTION(sf, tf) ( ((sf) & CAlnMap::fSeq) && !((tf) & CAlnMap::fSeq) )

#define	DELETION(sf, tf) ( !((sf) & CAlnMap::fSeq) && ((tf) & CAlnMap::fSeq) )

#define	MATCH(sf, tf) ( ((sf) & CAlnMap::fSeq) && ((tf) & CAlnMap::fSeq) )

Functions
	USING_SCOPE (objects)

Macro Definition Documentation

◆ DELETION

#define DELETION	(	sf,
		tf
	)	( !((sf) & CAlnMap::fSeq) && ((tf) & CAlnMap::fSeq) )

Definition at line 62 of file gff3flybase_writer.cpp.

◆ INSERTION

#define INSERTION	(	sf,
		tf
	)	( ((sf) & CAlnMap::fSeq) && !((tf) & CAlnMap::fSeq) )

Definition at line 61 of file gff3flybase_writer.cpp.

◆ MATCH

#define MATCH	(	sf,
		tf
	)	( ((sf) & CAlnMap::fSeq) && ((tf) & CAlnMap::fSeq) )

Definition at line 63 of file gff3flybase_writer.cpp.

Function Documentation

◆ USING_SCOPE()

USING_SCOPE ( objects )

Classes