NCBI C++ ToolKit
Classes | Macros | Functions
gff3flybase_writer.cpp File Reference
#include <ncbi_pch.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <objects/seqalign/Score.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/util/create_defline.hpp>
#include <objtools/alnmgr/alnmap.hpp>
#include <objects/seqalign/Product_pos.hpp>
#include <objects/seqalign/Spliced_seg.hpp>
#include <objects/seqalign/Spliced_exon.hpp>
#include <objects/seqalign/Spliced_exon_chunk.hpp>
#include <objects/seqalign/Score_set.hpp>
#include <objects/seqfeat/Org_ref.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <objtools/writers/gff3flybase_writer.hpp>
#include <objects/seqalign/Prot_pos.hpp>
+ Include dependency graph for gff3flybase_writer.cpp:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes

struct  SFlybaseCompareAlignments
 

Macros

#define INSERTION(sf, tf)   ( ((sf) & CAlnMap::fSeq) && !((tf) & CAlnMap::fSeq) )
 
#define DELETION(sf, tf)   ( !((sf) & CAlnMap::fSeq) && ((tf) & CAlnMap::fSeq) )
 
#define MATCH(sf, tf)   ( ((sf) & CAlnMap::fSeq) && ((tf) & CAlnMap::fSeq) )
 

Functions

 USING_SCOPE (objects)
 

Macro Definition Documentation

◆ DELETION

#define DELETION (   sf,
  tf 
)    ( !((sf) & CAlnMap::fSeq) && ((tf) & CAlnMap::fSeq) )

Definition at line 62 of file gff3flybase_writer.cpp.

◆ INSERTION

#define INSERTION (   sf,
  tf 
)    ( ((sf) & CAlnMap::fSeq) && !((tf) & CAlnMap::fSeq) )

Definition at line 61 of file gff3flybase_writer.cpp.

◆ MATCH

#define MATCH (   sf,
  tf 
)    ( ((sf) & CAlnMap::fSeq) && ((tf) & CAlnMap::fSeq) )

Definition at line 63 of file gff3flybase_writer.cpp.

Function Documentation

◆ USING_SCOPE()

USING_SCOPE ( objects  )
Modified on Tue Apr 23 07:36:50 2024 by modify_doxy.py rev. 669887