NCBI C++ ToolKit
Classes | Macros | Typedefs | Functions | Variables
lds2.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/ncbifile.hpp>
#include <corelib/stream_utils.hpp>
#include <util/checksum.hpp>
#include <util/format_guess.hpp>
#include <db/sqlite/sqlitewrapp.hpp>
#include <serial/objhook.hpp>
#include <serial/objistr.hpp>
#include <objects/seqset/seqset__.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <objects/seq/Annotdesc.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqalign/seqalign_exception.hpp>
#include <objects/seqres/Seq_graph.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objtools/error_codes.hpp>
#include <objtools/readers/reader_exception.hpp>
#include <objtools/lds2/lds2.hpp>
#include <objtools/lds2/lds2_expt.hpp>
#include <set>
#include <map>
#include <stack>
+ Include dependency graph for lds2.cpp:

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Classes

class  CLDS2_ObjectParser
 
struct  CLDS2_ObjectParser::SBioseqInfo
 
class  CLDS2_Seq_id_Hook
 
class  CLDS2_Seq_id_Hook::CGuard
 
class  CLDS2_AnnotType_Hook
 
class  CLDS2_AnnotDesc_Hook
 
class  CLDS2_Annot_Hook
 
class  CLDS2_SeqEntry_Hook
 
class  CLDS2_BioseqSet_Hook
 
class  CLDS2_BioseqIds_Hook
 

Macros

#define NCBI_USE_ERRCODE_X   Objtools_LDS2
 

Typedefs

typedef CLDS2_Database::TSeqIdSet TSeqIdSet
 
typedef SLDS2_AnnotIdInfo::TRange TAnnotRange
 

Functions

static bool IsSupportedFormat (CFormatGuess::EFormat format)
 

Variables

static const SLDS2_Blob::EBlobType kExpectedBlobTypes []
 

Macro Definition Documentation

◆ NCBI_USE_ERRCODE_X

#define NCBI_USE_ERRCODE_X   Objtools_LDS2

Definition at line 59 of file lds2.cpp.

Typedef Documentation

◆ TAnnotRange

Definition at line 68 of file lds2.cpp.

◆ TSeqIdSet

Definition at line 67 of file lds2.cpp.

Function Documentation

◆ IsSupportedFormat()

static bool IsSupportedFormat ( CFormatGuess::EFormat  format)
static

Variable Documentation

◆ kExpectedBlobTypes

const SLDS2_Blob::EBlobType kExpectedBlobTypes[]
static
Modified on Sun Mar 03 03:11:41 2024 by modify_doxy.py rev. 669887