#include <ncbi_pch.hpp>
#include <corelib/ncbifile.hpp>
#include <corelib/stream_utils.hpp>
#include <util/checksum.hpp>
#include <util/format_guess.hpp>
#include <db/sqlite/sqlitewrapp.hpp>
#include <serial/objhook.hpp>
#include <serial/objistr.hpp>
#include <objects/seqset/seqset__.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <objects/seq/Annotdesc.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seqalign/seqalign_exception.hpp>
#include <objects/seqres/Seq_graph.hpp>
#include <objects/submit/Seq_submit.hpp>
#include <objtools/error_codes.hpp>
#include <objtools/readers/reader_exception.hpp>
#include <objtools/lds2/lds2.hpp>
#include <objtools/lds2/lds2_expt.hpp>
#include <set>
#include <map>
#include <stack>

Include dependency graph for lds2.cpp:

Go to the SVN repository for this file.

Classes
class	CLDS2_ObjectParser

struct	CLDS2_ObjectParser::SBioseqInfo

class	CLDS2_Seq_id_Hook

class	CLDS2_Seq_id_Hook::CGuard

class	CLDS2_AnnotType_Hook

class	CLDS2_AnnotDesc_Hook

class	CLDS2_Annot_Hook

class	CLDS2_SeqEntry_Hook

class	CLDS2_BioseqSet_Hook

class	CLDS2_BioseqIds_Hook

Macros
#define	NCBI_USE_ERRCODE_X Objtools_LDS2

Typedefs
typedef CLDS2_Database::TSeqIdSet	TSeqIdSet

typedef SLDS2_AnnotIdInfo::TRange	TAnnotRange

Functions
static bool	IsSupportedFormat (CFormatGuess::EFormat format)

Variables
static const SLDS2_Blob::EBlobType	kExpectedBlobTypes []

Macro Definition Documentation

◆ NCBI_USE_ERRCODE_X

#define NCBI_USE_ERRCODE_X Objtools_LDS2

Definition at line 59 of file lds2.cpp.

Typedef Documentation

◆ TAnnotRange

typedef SLDS2_AnnotIdInfo::TRange TAnnotRange

Definition at line 68 of file lds2.cpp.

◆ TSeqIdSet

typedef CLDS2_Database::TSeqIdSet TSeqIdSet

Definition at line 67 of file lds2.cpp.

Function Documentation

◆ IsSupportedFormat()

static bool IsSupportedFormat ( CFormatGuess::EFormat format )

static

Definition at line 1001 of file lds2.cpp.

References CFormatGuess::eBinaryASN, CFormatGuess::eFasta, CFormatGuess::eTextASN, CFormatGuess::eXml, and format.

Referenced by CLDS2_Manager::UpdateData().

Variable Documentation

◆ kExpectedBlobTypes

const SLDS2_Blob::EBlobType kExpectedBlobTypes[]

static

Initial value:

= {
    SLDS2_Blob::eSeq_entry,
    SLDS2_Blob::eBioseq,
    SLDS2_Blob::eBioseq_set,
    SLDS2_Blob::eSeq_annot,
    SLDS2_Blob::eSeq_align_set,
    SLDS2_Blob::eSeq_align,
    SLDS2_Blob::eSeq_submit
}

Definition at line 616 of file lds2.cpp.

Referenced by CLDS2_ObjectParser::x_GetBlobType().

Classes

Macros

Typedefs

Functions

Variables