nucprot.h

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/* $Id: nucprot.h 96581 2022-04-16 16:12:01Z stakhovv $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * File Name: nucprot.h
 *
 * Author: Karl Sirotkin, Hsiu-Chuan Chen
 *
 * File Description:
 *
 */
 
#ifndef _NUCPROT_
#define _NUCPROT_
 
#define Seq_descr_GIBB_mod_dna          0
#define Seq_descr_GIBB_mod_rna          1
#define Seq_descr_GIBB_mod_extrachr     2
#define Seq_descr_GIBB_mod_plasmid      3
#define Seq_descr_GIBB_mod_mito         4
#define Seq_descr_GIBB_mod_chlo         5
#define Seq_descr_GIBB_mod_kinet        6
#define Seq_descr_GIBB_mod_cyane        7
#define Seq_descr_GIBB_mod_synth        8
#define Seq_descr_GIBB_mod_recomb       9
#define Seq_descr_GIBB_mod_partial      10
#define Seq_descr_GIBB_mod_complete     11
#define Seq_descr_GIBB_mod_mutagen      12
#define Seq_descr_GIBB_mod_natmut       13
#define Seq_descr_GIBB_mod_transposon   14
#define Seq_descr_GIBB_mod_insertion    15
#define Seq_descr_GIBB_mod_noleft       16
#define Seq_descr_GIBB_mod_noright      17
#define Seq_descr_GIBB_mod_macronuclear 18
#define Seq_descr_GIBB_mod_proviral     19
#define Seq_descr_GIBB_mod_est          20
#define Seq_descr_GIBB_mod_sts          21
#define Seq_descr_GIBB_mod_gss          22
 
BEGIN_NCBI_SCOPE
 
struct GeneRefFeats {
    bool                   valid;
    TSeqFeatList::iterator first;
    TSeqFeatList::iterator last;
 
    GeneRefFeats() :
        valid(false)
    {
    }
};
 
void CheckDupDates(TEntryList& seq_entries);
void ProcNucProt(ParserPtr pp, TEntryList& seq_entries, GeneRefFeats& gene_refs);
void ExtractDescrs(TSeqdescList& descrs_from, TSeqdescList& descrs_to, objects::CSeqdesc::E_Choice choice);
 
END_NCBI_SCOPE
#endif