seq_entry_hook.cpp

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/*
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Author:  Alexey Dobronadezhdin
 *
 * File Description:
 *
 * ===========================================================================
 */
#include <ncbi_pch.hpp>
 
#include <objects/seqset/Bioseq_set.hpp>
#include <objects/seq/Bioseq.hpp>
 
#include "base_report.hpp"
#include "seqid_hook.hpp"
#include "seq_entry_hook.hpp"
 
USING_NCBI_SCOPE;
USING_SCOPE(objects);
 
namespace pub_report
{
 
CSkipSeqEntryHook::CSkipSeqEntryHook(CBaseReport& report) :
    m_report(report),
    m_level(0)
{
}
 
void CSkipSeqEntryHook::SkipObject(CObjectIStream& in, const CObjectTypeInfo& info)
{
    ++m_level;
 
    if (m_level == 1) {
 
        CObjectTypeInfo type = CType<CBioseq>();
        type.FindMember("id").SetLocalSkipHook(in, new CSkipSeqIdHook(m_report));
 
        DefaultSkip(in, info);
 
        m_report.ClearCurrentSeqId();
        m_report.ClearData();
        // do not call ResetLocalSkipHook here, because CSkipSeqIdHook class will do that by itself
    } else
        DefaultSkip(in, info);
 
    --m_level;
}
 
}