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BlastGappedStats Struct Reference

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Structure containing hit counts from the gapped stage of a BLAST search. More...

#include <algo/blast/core/blast_diagnostics.h>

Public Attributes

Int4 seqs_ungapped_passed
 Number of sequences with top HSP after ungapped extension passing the e-value threshold. More...
 
Int4 extensions
 Total number of gapped extensions performed. More...
 
Int4 good_extensions
 Number of HSPs below the e-value threshold after gapped extension. More...
 
Int4 num_seqs_passed
 Number of sequences with top HSP passing the e-value threshold. More...
 

Detailed Description

Structure containing hit counts from the gapped stage of a BLAST search.

Definition at line 70 of file blast_diagnostics.h.

Member Data Documentation

◆ extensions

Int4 BlastGappedStats::extensions

◆ good_extensions

Int4 BlastGappedStats::good_extensions

Number of HSPs below the e-value threshold after gapped extension.

Definition at line 75 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), s_BlastSearchEngineCore(), testBlastHitCounts(), testLongMatchDiagnostics(), and testShortMatchDiagnostics().

◆ num_seqs_passed

Int4 BlastGappedStats::num_seqs_passed

Number of sequences with top HSP passing the e-value threshold.

Definition at line 77 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), and s_BlastSearchEngineCore().

◆ seqs_ungapped_passed

Int4 BlastGappedStats::seqs_ungapped_passed

Number of sequences with top HSP after ungapped extension passing the e-value threshold.

Definition at line 71 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate().


The documentation for this struct was generated from the following file:
Modified on Thu Feb 22 17:11:31 2024 by modify_doxy.py rev. 669887