BlastGappedStats Struct Reference

Search Toolkit Book for BlastGappedStats

Structure containing hit counts from the gapped stage of a BLAST search. More...

#include <algo/blast/core/blast_diagnostics.h>

Public Attributes
Int4	seqs_ungapped_passed
	Number of sequences with top HSP after ungapped extension passing the e-value threshold. More...
Int4	extensions
	Total number of gapped extensions performed. More...
Int4	good_extensions
	Number of HSPs below the e-value threshold after gapped extension. More...
Int4	num_seqs_passed
	Number of sequences with top HSP passing the e-value threshold. More...

Detailed Description

Structure containing hit counts from the gapped stage of a BLAST search.

Definition at line 70 of file blast_diagnostics.h.

Member Data Documentation

extensions

Int4 BlastGappedStats::extensions

Total number of gapped extensions performed.

Definition at line 74 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), BLAST_GetGappedScore(), BOOST_AUTO_TEST_CASE(), JumperNaWordFinder(), PHIGetGappedScore(), ShortRead_IndexedWordFinder(), testBlastHitCounts(), testLongMatchDiagnostics(), and testShortMatchDiagnostics().

good_extensions

Int4 BlastGappedStats::good_extensions

Number of HSPs below the e-value threshold after gapped extension.

Definition at line 75 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), s_BlastSearchEngineCore(), testBlastHitCounts(), testLongMatchDiagnostics(), and testShortMatchDiagnostics().

num_seqs_passed

Int4 BlastGappedStats::num_seqs_passed

Number of sequences with top HSP passing the e-value threshold.

Definition at line 77 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate(), and s_BlastSearchEngineCore().

seqs_ungapped_passed

Int4 BlastGappedStats::seqs_ungapped_passed

Number of sequences with top HSP after ungapped extension passing the e-value threshold.

Definition at line 71 of file blast_diagnostics.h.

Referenced by Blast_DiagnosticsUpdate().

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The documentation for this struct was generated from the following file:

• include/algo/blast/core/blast_diagnostics.h