Search Toolkit Book for BlastSeqLoc
Used to hold a set of positions, mostly used for filtering. More...
#include <algo/blast/core/blast_def.h>
Collaboration diagram for BlastSeqLoc:
Public Attributes | |
| struct BlastSeqLoc * | next |
| next in linked list More... | |
| SSeqRange * | ssr |
| location data on the sequence. More... | |
Detailed Description
Used to hold a set of positions, mostly used for filtering.
oid holds the index of the query sequence.
Definition at line 204 of file blast_def.h.
Member Data Documentation
◆ next
| struct BlastSeqLoc* BlastSeqLoc::next |
next in linked list
Definition at line 205 of file blast_def.h.
Referenced by BLAST_ComplementMaskLocations(), Blast_GetSeqLocInfoVector(), Blast_MaskTheResidues(), BlastHashLookupIndexQueryExactMatches(), BlastKmerGetKmerSet(), BlastLookupIndexQueryExactMatches(), BlastMaskLocDNAToProtein(), BlastMaskLocProteinToDNA(), BlastSeqLoc_RestrictToInterval(), BlastSeqLocCombine(), BlastSeqLocFree(), BlastSeqLocListReverse(), BlastSeqLocReverse(), BOOST_AUTO_TEST_CASE(), CBlastMaskLoc::DebugDump(), EstimateNumTableEntries(), CScore_SegPct::Get(), CSearch_Base< LEGACY, NHITS, derived_t >::operator()(), CSegMasker::operator()(), PHIGetPatternOccurrences(), s_AddPSSMNeighboringWords(), s_BlastSeqLoc2CSeqloc(), s_BlastSeqLocLen(), s_CompressedAddNeighboringWords(), s_ConvertBlastnMasks(), s_FillContigMBTable(), s_FillDiscMBTable(), s_FillMaskLocFromBlastResults(), s_FillPV(), s_NaHashLookupFillPV(), s_SegsToBlastSeqLoc(), s_SeqLocListInvert(), s_SubjectIndexNewCleanup(), and CBlastQueryFilteredFrames::UseProteinCoords().
◆ ssr
| SSeqRange* BlastSeqLoc::ssr |
location data on the sequence.
Definition at line 206 of file blast_def.h.
Referenced by BLAST_ComplementMaskLocations(), Blast_GetSeqLocInfoVector(), Blast_MaskTheResidues(), BlastHashLookupIndexQueryExactMatches(), BlastLookupIndexQueryExactMatches(), BlastMaskLocDNAToProtein(), BlastMaskLocProteinToDNA(), BlastSeqLocCombine(), BlastSeqLocNew(), BlastSeqLocNodeFree(), BlastSeqLocReverse(), BOOST_AUTO_TEST_CASE(), EstimateNumTableEntries(), CSearch_Base< LEGACY, NHITS, derived_t >::operator()(), PHIGetPatternOccurrences(), s_AddPSSMNeighboringWords(), s_BlastSeqLoc2CSeqloc(), s_CompressedAddNeighboringWords(), s_FillContigMBTable(), s_FillDiscMBTable(), s_FillPV(), s_MaskSequence(), s_NaHashLookupFillPV(), s_SegsToBlastSeqLoc(), s_SeqLocListInvert(), s_SeqRangeSortByStartPosition(), s_SubjectIndexNewCleanup(), SubjectIndexNew(), and x_TestGetSeqLocInfoVector().
The documentation for this struct was generated from the following file:
- include/algo/blast/core/blast_def.h
