CAlignMap::SMapRangeEdge Struct Reference

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#include <algo/gnomon/gnomon_model.hpp>

Public Member Functions
	SMapRangeEdge (TSignedSeqPos p, TSignedSeqPos e=0, EEdgeType t=eBoundary, const string &seq=kEmptyStr)
bool	operator< (const SMapRangeEdge &mre) const
bool	operator== (const SMapRangeEdge &mre) const

Public Attributes
TSignedSeqPos	m_pos
TSignedSeqPos	m_extra
EEdgeType	m_edge_type
string	m_extra_seq

Detailed Description

Definition at line 674 of file gnomon_model.hpp.

Constructor & Destructor Documentation

SMapRangeEdge()

CAlignMap::SMapRangeEdge::SMapRangeEdge ( TSignedSeqPos  p, TSignedSeqPos  e = 0, EEdgeType  t = eBoundary, const string &  seq = kEmptyStr  )

inline

Definition at line 675 of file gnomon_model.hpp.

Member Function Documentation

operator<()

bool CAlignMap::SMapRangeEdge::operator< ( const SMapRangeEdge &  mre ) const

inline

Definition at line 676 of file gnomon_model.hpp.

References m_pos.

operator==()

bool CAlignMap::SMapRangeEdge::operator== ( const SMapRangeEdge &  mre ) const

inline

Definition at line 677 of file gnomon_model.hpp.

References m_pos.

Member Data Documentation

m_edge_type

EEdgeType CAlignMap::SMapRangeEdge::m_edge_type

Definition at line 680 of file gnomon_model.hpp.

Referenced by CAlignMap::SMapRange::GetTypeFrom(), and CAlignMap::SMapRange::GetTypeTo().

m_extra

TSignedSeqPos CAlignMap::SMapRangeEdge::m_extra

Definition at line 679 of file gnomon_model.hpp.

Referenced by CAlignMap::SMapRange::GetExtendedFrom(), CAlignMap::SMapRange::GetExtendedTo(), CAlignMap::SMapRange::GetExtraFrom(), and CAlignMap::SMapRange::GetExtraTo().

m_extra_seq

string CAlignMap::SMapRangeEdge::m_extra_seq

Definition at line 681 of file gnomon_model.hpp.

Referenced by CAlignMap::SMapRange::GetExtraSeqFrom(), and CAlignMap::SMapRange::GetExtraSeqTo().

m_pos

TSignedSeqPos CAlignMap::SMapRangeEdge::m_pos

Definition at line 679 of file gnomon_model.hpp.

Referenced by CAlignMap::SMapRange::GetExtendedFrom(), CAlignMap::SMapRange::GetExtendedTo(), CAlignMap::SMapRange::GetFrom(), CAlignMap::SMapRange::GetTo(), CAlignMap::SMapRange::MoveOrigin(), CAlignMap::SMapRange::operator<(), operator<(), and operator==().

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The documentation for this struct was generated from the following file:

• include/algo/gnomon/gnomon_model.hpp