Search Toolkit Book for GapPrelimEditBlock
Preliminary version of GapEditBlock, used directly by the low- level dynamic programming routines. More...
#include <algo/blast/core/gapinfo.h>
Collaboration diagram for GapPrelimEditBlock:
Public Attributes | |
| GapPrelimEditScript * | edit_ops |
| array of edit operations More... | |
| Int4 | num_ops_allocated |
| size of allocated array More... | |
| Int4 | num_ops |
| number of edit ops presently in use More... | |
| EGapAlignOpType | last_op |
| most recent operation added More... | |
Detailed Description
Preliminary version of GapEditBlock, used directly by the low- level dynamic programming routines.
Member Data Documentation
◆ edit_ops
| GapPrelimEditScript* GapPrelimEditBlock::edit_ops |
array of edit operations
Definition at line 74 of file gapinfo.h.
Referenced by Blast_PrelimEditBlockToGapEditScript(), GapPrelimEditBlockAdd(), GapPrelimEditBlockAppend(), GapPrelimEditBlockFree(), GapPrelimEditBlockNew(), s_BlastGapAlignStruct_Copy(), s_BlastOOFTracebackToGapEditScript(), s_GapPrelimEditBlockAddNew(), s_GapPrelimEditBlockRealloc(), and s_GetTraceback().
◆ last_op
| EGapAlignOpType GapPrelimEditBlock::last_op |
most recent operation added
Definition at line 77 of file gapinfo.h.
Referenced by GapPrelimEditBlockAdd(), GapPrelimEditBlockNew(), GapPrelimEditBlockReset(), and s_GapPrelimEditBlockAddNew().
◆ num_ops
| Int4 GapPrelimEditBlock::num_ops |
number of edit ops presently in use
Definition at line 76 of file gapinfo.h.
Referenced by Blast_PrelimEditBlockToGapEditScript(), GapPrelimEditBlockAdd(), GapPrelimEditBlockNew(), GapPrelimEditBlockReset(), s_BlastOOFTracebackToGapEditScript(), s_GapPrelimEditBlockAddNew(), and s_GetTraceback().
◆ num_ops_allocated
| Int4 GapPrelimEditBlock::num_ops_allocated |
size of allocated array
Definition at line 75 of file gapinfo.h.
Referenced by GapPrelimEditBlockNew(), s_BlastGapAlignStruct_Copy(), and s_GapPrelimEditBlockRealloc().
The documentation for this struct was generated from the following file:
- include/algo/blast/core/gapinfo.h
