update_seq.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbiutil.hpp>
#include <objects/seq/seqport_util.hpp>
#include <objects/seqfeat/RNA_ref.hpp>
#include <objects/seqfeat/Trna_ext.hpp>
#include <objects/seqfeat/Cdregion.hpp>
#include <objects/seqfeat/Code_break.hpp>
#include <objects/seqfeat/Gb_qual.hpp>
#include <objects/seqfeat/SeqFeatXref.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/pub/Pub_set.hpp>
#include <objects/pub/Pub.hpp>
#include <objects/biblio/Cit_sub.hpp>
#include <objects/general/Date.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <objects/seq/Seq_descr.hpp>
#include <objects/general/User_object.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seq/seq_macros.hpp>
#include <objects/seqset/seqset_macros.hpp>
#include <objects/pub/pub_macros.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/bioseq_set_handle.hpp>
#include <objmgr/feat_ci.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <objmgr/seq_annot_ci.hpp>
#include <objtools/edit/string_constraint.hpp>
#include <gui/widgets/wx/message_box.hpp>
#include <gui/widgets/edit/citsub_updater.hpp>
#include <gui/objutils/cmd_add_seqentry.hpp>
#include <gui/objutils/cmd_change_seq_entry.hpp>
#include <gui/packages/pkg_sequence_edit/update_seq.hpp>
#include <gui/packages/pkg_sequence_edit/sequpd_except.hpp>
#include <gui/packages/pkg_sequence_edit/sequpd.hpp>
#include <objtools/edit/cds_fix.hpp>

Include dependency graph for update_seq.cpp:

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Macros
#define	FUSE_STRINGFIELDS(Var1, Var2, Field)
#define	FUSE_BOOLEANFIELDS(Var1, Var2, Field)
#define	FUSE_LISTFIELDS(Var1, Var2, Type, Field)
#define	FUSE_VECTORFIELDS(Var1, Var2, Type, Field)

Functions
	USING_SCOPE (objects)

Variables
static const char *	kNewLocalID = "NewSeq"

Macro Definition Documentation

FUSE_BOOLEANFIELDS

#define FUSE_BOOLEANFIELDS	(		Var1,
			Var2,
			Field
	)

Value:

        {{ \
        bool fused_value = (Var1).IsSet##Field() ? (Var1).Get##Field() : false; \
        bool value = (Var2).IsSet##Field() ? (Var2).Get##Field() : false; \
        if (fused_value || value) { \
            (Var1).Set##Field(true); \
                } else { \
            (Var1).Reset##Field(); \
                } \
                }}

Definition at line 390 of file update_seq.cpp.

FUSE_LISTFIELDS

#define FUSE_LISTFIELDS	(		Var1,
			Var2,
			Type,
			Field
	)

Value:

    if ((Var2).IsSet##Field() && !(Var2).Get##Field().empty()) { \
        C##Type::T##Field& cont = (Var1).Set##Field(); \
        copy((Var2).Get##Field().begin(), (Var2).Get##Field().end(), back_inserter(cont)); \
        }

Definition at line 401 of file update_seq.cpp.

FUSE_STRINGFIELDS

#define FUSE_STRINGFIELDS	(		Var1,
			Var2,
			Field
	)

Value:

        {{ \
        string orig_value = (Var1).IsSet##Field() ? (Var1).Get##Field() : kEmptyStr; \
        string value = (Var2).IsSet##Field() ? (Var2).Get##Field() : kEmptyStr; \
        if (!NStr::EqualNocase(orig_value, value) && edit::AddValueToString(orig_value, value, edit::eExistingText_append_semi)) { \
            (Var1).Set##Field(orig_value); \
                } \
                }}

Definition at line 381 of file update_seq.cpp.

FUSE_VECTORFIELDS

#define FUSE_VECTORFIELDS	(		Var1,
			Var2,
			Type,
			Field
	)

Value:

        {{ \
        if ((Var2).IsSet##Field() && !(Var2).Get##Field().empty()) { \
            size_t new_size = (Var2).Get##Field().size(); \
            new_size += (Var1).IsSet##Field() ? (Var1).Get##Field().size() : 0; \
            C##Type::T##Field& cont = (Var1).Set##Field(); \
            cont.reserve(new_size); \
            copy((Var2).Get##Field().begin(), (Var2).Get##Field().end(), back_inserter(cont)); \
                } \
                }}

Definition at line 407 of file update_seq.cpp.

Function Documentation

USING_SCOPE()

USING_SCOPE

(

objects

)

Variable Documentation

kNewLocalID

const char* kNewLocalID = "NewSeq"

static

Definition at line 486 of file update_seq.cpp.

Referenced by CSequenceUpdater::Update().