utilref.cpp File Reference

#include <ncbi_pch.hpp>
#include "ftacpp.hpp"
#include <objects/general/Person_id.hpp>
#include <objects/biblio/Auth_list.hpp>
#include <objects/biblio/Cit_gen.hpp>
#include "index.h"
#include <objtools/flatfile/flatdefn.h>
#include "ftaerr.hpp"
#include "asci_blk.h"
#include "utilref.h"
#include "add.h"
#include "utilfun.h"

Include dependency graph for utilref.cpp:

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Macros
#define	THIS_FILE   "utilref.cpp"
#define	MAX_PAGE   50
#define	OTHER_MEDIUM   255

Functions
	USING_SCOPE (objects)
ValNodePtr	get_tokens (char *pt, const Char *delimeter)
static void	RemoveSpacesAndCommas (string &str)
void	get_auth_from_toks (ValNodePtr token, ERefFormat format, CRef< CAuth_list > &auths)
CRef< CAuthor >	get_std_auth (const Char *token, ERefFormat format)
void	get_auth (char *pt, ERefFormat format, char *jour, CRef< CAuth_list > &auths)
void	get_auth_consortium (char *cons, CRef< CAuth_list > &auths)
static Int4	check_mix_pages_range (char *pages)
Int4	valid_pages_range (char *pages, const Char *title, Int4 er, bool inpress)
CRef< CDate >	get_date (const Char *year)
CRef< CCit_gen >	get_error (char *bptr, CRef< CAuth_list > &auth_list, CRef< CTitle::C_E > &title)

Macro Definition Documentation

MAX_PAGE

#define MAX_PAGE   50

Definition at line 59 of file utilref.cpp.

OTHER_MEDIUM

#define OTHER_MEDIUM   255

Definition at line 60 of file utilref.cpp.

THIS_FILE

#define THIS_FILE   "utilref.cpp"

Definition at line 57 of file utilref.cpp.

Function Documentation

check_mix_pages_range()

static Int4 check_mix_pages_range ( char *  pages )

static

Definition at line 326 of file utilref.cpp.

References ch1, ch2, i, StringChr, and StringEqu().

Referenced by valid_pages_range().

get_auth()

void get_auth	(	char *	pt,
		ERefFormat	format,
		char *	jour,
		CRef< CAuth_list > &	auths
	)

Definition at line 253 of file utilref.cpp.

References delimiter, EMBL_REF, ERR_REFERENCE_EtAlInAuthors, ErrPostEx, format, GB_REF, get_auth_from_toks(), get_tokens(), isalnum(), len, PDB_REF, PIR_REF, SEV_WARNING, SP_REF, StringEquN(), StringLen(), and ValNodeFree().

Referenced by embl_refs(), gb_refs_common(), get_book(), GetCitBook(), SprotRefString(), and XMLRefs().

get_auth_consortium()

void get_auth_consortium	(	char *	cons,
		CRef< CAuth_list > &	auths
	)

Definition at line 292 of file utilref.cpp.

References CRef< C, Locker >::Empty(), NStr::EqualNocase(), CRef< C, Locker >::Reset(), CAuthor_Base::SetName(), CAuth_list_Base::SetNames(), and StringChr.

Referenced by embl_refs(), gb_refs_common(), SprotRefString(), and XMLRefs().

get_auth_from_toks()

void get_auth_from_toks	(	ValNodePtr	token,
		ERefFormat	format,
		CRef< CAuth_list > &	auths
	)

Definition at line 127 of file utilref.cpp.

References ValNode::data, CRef< C, Locker >::Empty(), ERR_REFERENCE_IllegalAuthorName, ErrPostEx, format, get_std_auth(), CAuthor_Base::GetName(), CPerson_id_Base::GetName(), i, CName_std_Base::IsSetFirst(), CName_std_Base::IsSetInitials(), CName_std_Base::IsSetLast(), CName_std_Base::IsSetSuffix(), last(), ValNode::next, RemoveSpacesAndCommas(), CRef< C, Locker >::Reset(), CAuthor_Base::SetName(), CAuth_list_Base::SetNames(), SEV_WARNING, StringEquN(), suffix, and NStr::TruncateSpacesInPlace().

Referenced by get_auth(), and GetCitBookOld().

get_date()

CRef<CDate> get_date

(

const Char *

year

)

Definition at line 503 of file utilref.cpp.

References ERR_REFERENCE_IllegalDate, ERR_REFERENCE_ImpendingYear, ERR_REFERENCE_YearPrecedes1900, ERR_REFERENCE_YearPrecedes1950, ErrPostEx, NStr::fAllowTrailingSymbols, i, CRef< C, Locker >::Reset(), CDate_Base::SetStd(), CDate_std_Base::SetYear(), SEV_ERROR, SEV_WARNING, and NStr::StringToInt().

Referenced by get_art(), get_book(), get_thesis(), get_whole_book(), and GetCitBookOld().

get_error()

CRef<CCit_gen> get_error	(	char *	bptr,
		CRef< CAuth_list > &	auth_list,
		CRef< CTitle::C_E > &	title
	)

Definition at line 541 of file utilref.cpp.

References isdigit(), len, CRef< C, Locker >::NotEmpty(), NStr::Sanitize(), StringEquN(), and StringLen().

Referenced by journal().

get_std_auth()

CRef<CAuthor> get_std_auth	(	const Char *	token,
		ERefFormat	format
	)

Definition at line 177 of file utilref.cpp.

References _TROUBLE, EMBL_REF, format, GB_REF, CName_std_Base::IsSetLast(), ML_REF, PDB_REF, PIR_REF, CRef< C, Locker >::Reset(), CName_std_Base::SetInitials(), CName_std_Base::SetLast(), CAuthor_Base::SetName(), CPerson_id_Base::SetName(), SP_REF, and StringLen().

Referenced by get_auth_from_toks().

get_tokens()

ValNodePtr get_tokens	(	char *	pt,
		const Char *	delimeter
	)

Definition at line 66 of file utilref.cpp.

References ValNode::data, ValNode::next, StringChr, StringEquN(), StringLen(), and ValNodeNew().

Referenced by get_auth(), GetCitBookOld(), and NotName().

RemoveSpacesAndCommas()

static void RemoveSpacesAndCommas ( string &  str )

static

Definition at line 116 of file utilref.cpp.

References buf, and str().

Referenced by get_auth_from_toks().

USING_SCOPE()

USING_SCOPE

(

objects

)

valid_pages_range()

Int4 valid_pages_range	(	char *	pages,
		const Char *	title,
		Int4	er,
		bool	inpress
	)

Definition at line 419 of file utilref.cpp.

References check_mix_pages_range(), ERR_REFERENCE_IllegPageRange, ERR_REFERENCE_InvertPageRange, ERR_REFERENCE_LargePageRange, ERR_REFERENCE_UnusualPageNumber, ErrPostEx, i, MAX_PAGE, SEV_WARNING, and StringChr.

Referenced by get_art(), get_book(), and ParseJourLine().