Conserved Protein Domain Family
CLN6

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pfam15156: CLN6 (this model, PSSM-Id:291813 is obsolete and has been replaced by 464536)
Ceroid-lipofuscinosis neuronal protein 6
This family of proteins is found in eukaryotes. Proteins in this family are typically between 190 and 310 amino acids in length.
Statistics
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PSSM-Id: 291813
Aligned: 10 rows
Threshold Bit Score: 415.674
Created: 29-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_007231253  28 ASKDTDTPVKKPQFHLDLWCFFTIQNWVLDFGRSIIMILFPLQWFPLNKLIVGDYFHIAYNVITPFLLLKLIDRSPKTLP 107 Mexican tetra
XP_005997131  24 GAADGDAPVKKSHFHLDLWFYFTVQNWVLDFGRPVAMIILPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPKTLP 103 coelacanth
XP_005169032  20 SEKTTAAATPRSQFHTDLWLCFTVQNWILDFGRPIAMIIMPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPTALP 99  zebrafish
NP_001178723  27 GSAKAEDKDRTAPFHFDLWFYFTLQNWVLDFGRPIAMLVFPIQWFPLNKPSVGDYFHMAYNIITPFLLLKLMERSPRTLP 106 Norway rat
XP_005809649  18 vCKENAPKRKRQPFHFDLWLCLTLQNWILDFGRPIVMIALPLELFPLNKPSVGDYFHMIYNVVAPFLLLKLIERAPRPVP 97  southern platyfish
NP_001120230  20 SSAQPDDGSRTSRFHLDLWFYFTVQNWLLDFGRPIVMIILPLDWFPLNKPSAGDYFHMAYNIITPLLLLKLIERSPKTLP 99  western clawed ...
XP_699372     23 LRELRESCLTPDQFHSCFWCCFTLQNWLLDIGRPVITIFCPLDWFPLNKPSAADYCHMLYNITTPFLLLKLMERSPKTLP 102 zebrafish
XP_010731060  23 GLKENVPQKKTQHFHSDLWFCLTLQNWILDFGRPIVMIILPLEWFPLNMPSAGDYFHMAYNVITPFLMLKLIERSPRALS 102 large yellow cr...
XP_005937037  31 GSTQVEAVLPRPRFHLDLWLSFTFQNWILDVGRPVVMLVLPADWLPLQHPGVADYLHFLYNVTAPLILLKMLERSPWMLP 110 Burton's mouthb...
XP_009003374  30 GSVSPEEAAHAAPFHLDLWFYFMLQNWVLDFGRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKVL--CPMTPT 107 white-tufted-ea...
XP_007231253 108 VSAVYLCIIAFVMGAS-INLVGDSMNHRLLLSGYQLHLSVRE-------------NPIMKNLNPPS-------------- 159 Mexican tetra
XP_005997131 104 RAAVYICIITFVMGAS-IHLVGDSVNHRLILSGYQLHLSVRE-------------NPIIKNLKPEA-------------- 155 coelacanth
XP_005169032 100 RSAVYLSIITFVMGAS-IHLVGDSINHRLILSGYQLHLSVRE-------------NPIIKDLKPAS-------------- 151 zebrafish
NP_001178723 107 RSIIYVSIITFIMGAS-IHLVGDSVNHRLLFSGYQHHLSVRE-------------NPIIKNLKPET-------------- 158 Norway rat
XP_005809649  98 HTAVHLCIITFVMGAS-IHLVGDSINHRLILSGYQLHLSVRE-------------NPIIKDLKPAS-------------- 149 southern platyfish
NP_001120230 100 NSVIYVSIITFVMGAS-IHLVGDSVNHRLIFSGYQLHLSVRD-------------NPIMQNLTPPT-------------- 151 western clawed ...
XP_699372    103 RSAMYLCIITFVMGSS-IHLLGESINQRLLISGYQTHLTLRE-------------NPIIKSISPHT-------------- 154 zebrafish
XP_010731060 103 RSAVYLCIITFVMGAS-IHLVGDSINHRLILSGYQLHLSVRE-------------NPIIKDLKPAS-------------- 154 large yellow cr...
XP_005937037 111 GLAVRLGIIAVSMGTT-LHLVADSITRRLLLIGYQLHLPVRE-------------NPIMRNLKPSS-------------- 162 Burton's mouthb...
XP_009003374 108 VSCHPHSLHTWQEGDAkPCV---LIQARSCLL-LAGEGCDRAacpgpgaspawacLTEGKARDREQgsggglglgggwse 183 white-tufted-ea...
XP_007231253 160 --------------------------LVDSFELLYYYDEHVGRCLWYIPFFLILFLYFSGCFTVLKVEKRMPQSAWLLLA 213 Mexican tetra
XP_005997131 156 --------------------------LIDSFELLYYYDENLGHSMWYIPFYLIFFLYFTGCFTPIKEDNKMPLSAWLLLG 209 coelacanth
XP_005169032 152 --------------------------LIDSFELLYYYDEHLGHSMWYIPFFLIIFLYFTGCFTQVK-DEKMSTSGWLLLG 204 zebrafish
NP_001178723 159 --------------------------LIDSFELLYYYDEYLGHCMWYIPFFLILFMYFSGCFTTSKAESHMPGPALLLVV 212 Norway rat
XP_005809649 150 --------------------------LIDSFELLYYYDEHLGHLMWYIPFFIIVLIYFSACFSDSDGQEKMPLSGWLLLG 203 southern platyfish
NP_001120230 152 --------------------------LVDSFELLYYYDEYLGHSMWYIPFFLILFIYFTGCFTKIRAESRMPLSAWALLA 205 western clawed ...
XP_699372    155 --------------------------LIDSFELLQYYDESLGLCMWYVPLFLILFLYFTGCFTIVKAEKKMPVSAWILLG 208 zebrafish
XP_010731060 155 --------------------------LIDSFELLYYYDEQLGHLMWYIPFFIILFIYFTGCFTKAK-EQRIPVSGWLLLG 207 large yellow cr...
XP_005937037 163 --------------------------LVDVFELLFHYDDTVGHMMWYVPFFLVLVLFFNGCFSRREQEERMPPSAWMLLA 216 Burton's mouthb...
XP_009003374 184 gilgvpaspwtdigipsptlpcpclpQIDSFELLYYYDEYLGHCMWYIPFFLILFMYFSGCFTASKAESLMPGPALLLVA 263 white-tufted-ea...
XP_007231253 214 PSSLYYWYLVTERQIFILFIFTFFAMTATVMHQKRKGLVPDCNGLFLLYSFSIVLILLTVWVSCLWNDKILRKKYPGVIY 293 Mexican tetra
XP_005997131 210 PSGLYYWYLVTEGQIFILYIFTFFAMMAIVMHQKRKGLVLDSNGLFLFYSFSITLALIAVWVVWLWNDKILRKKYPGVMY 289 coelacanth
XP_005169032 205 PSAVYYWYLITEGQIFVLYVFTFFAMVATVMRQRRMGFVLDSNGRFLFYNFIITLGLVLVWVAYLWNDKVLRKKYPGIIY 284 zebrafish
NP_001178723 213 PSGIYYWYLVTEGQIFILFIFTFFAMLALVLHQKRRRLLLDSNGLFLFCSFALTLLLVALWVAWLWNDPVLRKKYPGVIY 292 Norway rat
XP_005809649 204 ASSLYYWYLATEGQITGLFLLTFLAMFTVMIFQKRKGLAPDSNGSFLFYSFSITLLLVSLWVAYLWDDPVLRNKYPGLFY 283 southern platyfish
NP_001120230 206 PSSLYYWYLVTEGQIFIIFIFTFFAMLAIIMHQRRKGLHLDSNGLFLLFSFSATLIFIAAWIVWLWNDQILRKKYPGVIY 285 western clawed ...
XP_699372    209 PSGLYYWYLVTEGQIFIPFIFTFFAMMATVLHQKRKGFLPDSNGLFLLYSFSISLFLVSVWVACLWNDKVLRKKYPGVMY 288 zebrafish
XP_010731060 208 PSALYYWYLVTEGQITELFLLTSLAMVAMVIYQQRKGLTPDSNGLFLLCSFCVTALLVVLWVVYLWNDPVLRNKYPGLIY 287 large yellow cr...
XP_005937037 217 PNAAYYWYLITEGQTFILFTFTFFAMTTTVMHQRRRGLFLNSDGLFMFYSFSAALILVAIWVACLWNDSILRTTVPGLIY 296 Burton's mouthb...
XP_009003374 264 PSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQKRKGLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIY 343 white-tufted-ea...
XP_007231253 294 IPEPWAVYTLHIRD 307 Mexican tetra
XP_005997131 290 VPEPWAFYSLHIKS 303 coelacanth
XP_005169032 285 VPEPWSFYTLHIKG 298 zebrafish
NP_001178723 293 VPEPWAFYTLHVSN 306 Norway rat
XP_005809649 284 VPEPWSYYTLHIRK 297 southern platyfish
NP_001120230 286 IPEPWAFYTLHVNN 299 western clawed frog
XP_699372    289 IPEPWALYTLHLRD 302 zebrafish
XP_010731060 288 VPEPWSYYTLHVKK 301 large yellow croaker
XP_005937037 297 IPRPCTVYTLHLHQ 310 Burton's mouthbrooder
XP_009003374 344 VPEPWAFYTLHVSS 357 white-tufted-ear marmoset
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