| Run | Spots | Bases | Size | GC content | Published | Access Type |
|---|---|---|---|---|---|---|
SRR1200895 |
215.9M | 43.6Gbp | 31.3G | 48% | 2016-03-24 | public |
This run has 2 reads per spot:
| L=101, 100% | L=101, 100% |
- Legend
Technical read Application Read L=4, 100% Length is 4, 100% spots contain this read ̅L=165, σ=92.8, 66% Average length is 165, standard deviation is 92.8, 66% spots contain this read
| Experiment | Library Name | Platform | Strategy | Source | Selection | Layout | Action |
|---|---|---|---|---|---|---|---|
| SRX497638 | Illumina | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED |
Show designHide design
"The Brain Transcriptome of the White-throated Sparrow, a Vertebrate Model of Inversion Polymorphism"
| Biosample | Sample Description | Organism |
|---|---|---|
| SAMN02358169 (SRS579610) | Zonotrichia albicollis |
| Bioproject | SRA Study | Title |
|---|---|---|
| PRJNA231930 | SRP040426 | The Brain Transcriptome of the White-throated Sparrow, a Vertebrate Model of Inversion Polymorphism |
Abstract:
Transcriptome sequencing of male and female brains. Female samples represent the ZAL2m/ZAL2m, ZAL2/ZAL2m and ZAL2/ZAL2 genotypes. Male samples represent the ZAL2/ZAL2m and ZAL2/ZAL2 genotypes.
SRA archive data
SRA archive data is normalized by the SRA load process and used by the SRA Toolkit to read and produce formats like FASTQ, SAM, etc. The default toolkit configuration enables it to find and retrieve SRA runs by accession.
Public SRA files are now available from GCP and AWS cloud platforms as well as from NCBI. Access to most data in the cloud requires a user account with the cloud service provider. The user’s account will incur costs for cloud compute or to copy data outside of the specified cloud service region.
| Type | Size | Location | Name | Free Egress | Access Type |
|---|---|---|---|---|---|
| SRA Normalized | 30,589,082 Kb | AWS | https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR1200895/SRR1200895 | worldwide | anonymous |
| SRA Lite | 11,000,622 Kb | NCBI | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR001/200/SRR1200895/SRR1200895.sralite.1 | worldwide | anonymous |
| AWS | s3://sra-pub-zq-8/SRR1200895/SRR1200895.sralite.1 | s3.us-east-1 | aws identity | ||
| GCP | gs://sra-pub-zq-106/SRR1200895/SRR1200895.noqual.1 | gs.us-east1 | gcp identity |
Original format
The original files submitted to SRA. These files may require specific software to open, read and interpret data.
| Type | Size | Location | Name | Free Egress | Access Type |
|---|---|---|---|---|---|
| fastq | 338,714 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_001.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 342,944 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_002.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 344,198 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R1_003.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 352,155 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_004.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 355,291 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_005.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 352,107 Kb | AWS | s3://sra-pub-src-5/SRR1200895/1131_NoIndex_L006_R1_006.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 354,984 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_007.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 356,388 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_008.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 356,386 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R1_009.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 337,948 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R1_010.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 342,759 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R1_011.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 343,277 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R1_012.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 358,224 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_026.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 333,514 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_028.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 336,831 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_029.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 355,346 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R1_035.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 351,373 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R1_034.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 338,401 Kb | AWS | s3://sra-pub-src-5/SRR1200895/1131_NoIndex_L006_R1_038.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 347,512 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_033.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 343,958 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R1_040.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 349,611 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R1_032.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 342,923 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R1_042.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 346,842 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R1_043.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 350,374 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_044.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 349,990 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R1_031.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 339,448 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R1_030.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 352,801 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R1_027.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 338,861 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_048.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 356,304 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R1_025.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 353,109 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R1_024.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 348,094 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R1_051.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 352,792 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R1_023.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 354,874 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R1_053.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 409,544 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R1_054.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 353,429 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_022.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 336,265 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R2_002.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 346,676 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_021.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 346,141 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_020.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 341,139 Kb | AWS | s3://sra-pub-src-6/SRR1200895/1131_NoIndex_L006_R1_019.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 357,863 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_018.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 351,705 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_007.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 356,606 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_008.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 359,884 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_009.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 356,315 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_017.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 334,938 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_011.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 353,238 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_016.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 350,712 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R1_015.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 350,922 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R1_014.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 345,506 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R2_015.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 348,220 Kb | AWS | s3://sra-pub-src-5/SRR1200895/1131_NoIndex_L006_R2_016.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 354,600 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R2_017.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 350,600 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R1_013.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 331,619 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R1_037.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 337,373 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_020.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 339,776 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R2_021.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 343,565 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R2_022.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 354,432 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R1_036.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 349,042 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R2_024.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 352,546 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_025.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 339,223 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R1_039.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 347,907 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_041.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 357,556 Kb | AWS | s3://sra-pub-src-7/SRR1200895/1131_NoIndex_L006_R1_045.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 337,484 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_046.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 334,686 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R2_030.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 343,484 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R2_031.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 347,923 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R2_032.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 347,980 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R2_033.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 354,818 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R2_034.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 340,442 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R1_047.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 343,768 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R1_049.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 326,709 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R2_037.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 352,909 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R1_050.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 350,933 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R1_052.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 335,945 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R2_040.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 343,752 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_041.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 340,357 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R2_042.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 343,918 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_043.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 349,416 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R2_044.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 332,066 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R2_001.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 332,705 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_046.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 338,239 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R2_003.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 344,368 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_004.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 348,904 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R2_005.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 347,503 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_050.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 347,421 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_006.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 330,489 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R2_010.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 336,872 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R2_012.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 340,692 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_013.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 345,889 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R2_014.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 360,711 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_018.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 348,097 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_023.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 338,703 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R2_026.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 301,364 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_027.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 329,713 Kb | AWS | s3://sra-pub-src-12/SRR1200895/1131_NoIndex_L006_R2_028.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 332,844 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R2_029.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 359,548 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_035.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 357,328 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R2_036.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 331,423 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_038.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 332,910 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R2_039.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 362,628 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_045.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 334,699 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R2_047.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 336,380 Kb | AWS | s3://sra-pub-src-13/SRR1200895/1131_NoIndex_L006_R2_048.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 339,425 Kb | AWS | s3://sra-pub-src-11/SRR1200895/1131_NoIndex_L006_R2_049.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 346,147 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_051.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 352,781 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_052.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 357,224 Kb | AWS | s3://sra-pub-src-14/SRR1200895/1131_NoIndex_L006_R2_053.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 422,461 Kb | AWS | s3://sra-pub-src-9/SRR1200895/1131_NoIndex_L006_R2_054.fastq.gz | - | Use Cloud Data Delivery |
| fastq | 333,007 Kb | AWS | s3://sra-pub-src-10/SRR1200895/1131_NoIndex_L006_R2_019.fastq.gz | - | Use Cloud Data Delivery |
- Egress and Access: what does it mean?
-
Egress
term used by cloud providers to describe cost (charged to the user) of moving data outside of the storage region Free Egresscolumn indicates where the data can be accessed without an egress charge: - worldwide can be downloaded from anywhere for free
- s3.us-east-1 is free to access from machines running in Amazon's us-east-1 region, access from other regions or transport outside of AWS will require paying egress charges
- gs.US is free to access from machines running in Google’s gs.US region, access from other regions or transport outside of GCP will require paying egress charges
Access Typedescribes whether a cloud service user account is necessary for data access. "anonymous" access means general public access Namecolumn provides either a link to free download location at NCBI or a URL for the cloud provider storage location. Either s3:// for Amazon or gs:// for Google storage
- Why is SRA data in the cloud?
-
In order to support large scale (hyper parallel) data analyses SRA data is now available at GCP and AWS with few caveats:
- SRA data is copied to the cloud from NCBI. There may be a lag between availability from NCBI and from CSP (cloud service providers)
- To access public data user account with the cloud service provider is required. Your account will incur costs for cloud compute and/or to copy data (either archival or results of your comute) outside of the specified cloud service region
- Distribution of protected data is signed by NIH account and requires user to operate in the same region as the data
SRA has also begun to provide access to originally submitted source files:
- not all files have been validated by SRA
- not all files have been copied to cloud locations (recovering it from NCBI tape system takes time ).
- the volume of this type of data a much larger and it is not used as often so we will keep most of it on tape or "cold" storage in cloud. As a result the data may not be available instantly and restore requests will be served on first-come first-served basis and cost of resore may be charged to your user account.
- What is "Cloud Data Delivery"?
-
Please visit SRA Data Delivery service to request Sequence Read Archive (SRA) data to be delivered to an Amazon Web Services (AWS) or Google Cloud Platform (GCP) bucket of your choice.
Taxonomy Analysis
- Unidentified reads: 11.43%
- Identified reads: 88.57%
Strong signals
| SuperKingdom | Organism | Rank | %% | Kbp | Coverage |
|---|---|---|---|---|---|
| Eukaryota | Zonotrichia albicollis | species | 82.9 | 36,172,130 | |
| Eukaryota | Geospiza fortis | species | 1.9 | 845,931 | |
| Eukaryota | Serinus canaria | species | 1.7 | 721,860 | |
| Eukaryota | Pseudopodoces humilis | species | 0.3 | 114,864 | |
| Eukaryota | Sturnus vulgaris | species | 0.2 | 101,627 | |
| Eukaryota | Taeniopygia guttata | species | 0.2 | 99,154 | |
| Eukaryota | Corvus brachyrhynchos | species | 0.2 | 96,832 | |
| Eukaryota | Ficedula albicollis | species | 0.1 | 61,240 | |
| Eukaryota | Manacus vitellinus | species | 0.1 | 46,581 |
- How to read results?
Results show distribution of reads mapping to specific taxonomy nodes as a percentage of total reads within the analyzed run. In cases where a read maps to more than one related taxonomy node, the read is reported as originating from the lowest shared taxonomic node. So when a read maps to two species belonging to the same genus, it is assigned at the genus level. Sequence reads from a single organism will map to several taxonomy nodes spanning the organism’s lineage. The number of reads mapping to higher level nodes will typically be greater than those that map to terminal nodes.
STAT results are proportional to the size of sequenced genomes. Given a mixed sample containing several organisms at equal copy number, proportionally more reads originate from the larger genomes. This means that the percentages reported by STAT will reflect genome size and must be considered against the genomic complexity of the sequenced sample.
- How can I query this analysis data?
Please take a look at NCBI SRA Cloud-based Taxonomy Analysis Table