SRA Toolkit Documentation
Frequently Used Tools:
fastq-dump: Convert SRA data into fastq format
prefetch: Allows command-line downloading of SRA, dbGaP, and ADSP data
sam-dump: Convert SRA data to sam format
sra-pileup: Generate pileup statistics on aligned SRA data
vdb-config: Display and modify VDB configuration information
vdb-decrypt: Decrypt non-SRA dbGaP data ("phenotype data")
Additional Tools:
abi-dump: Convert SRA data into ABI format (csfasta / qual)
illumina-dump: Convert SRA data into Illumina native formats (qseq, etc.)
sff-dump: Convert SRA data to sff format
sra-stat: Generate statistics about SRA data (quality distribution, etc.)
vdb-dump: Output the native VDB format of SRA data.
vdb-encrypt: Encrypt non-SRA dbGaP data ("phenotype data")
vdb-validate: Validate the integrity of downloaded SRA data