| Run | Spots | Bases | Size | GC content | Published | Access Type |
|---|---|---|---|---|---|---|
SRR954892 |
67.5M | 12.1Gbp | 8.5G | 49% | 2015-07-22 | public |
This run has 2 reads per spot:
| L=90, 100% | L=90, 100% |
- Legend
Technical read Application Read L=4, 100% Length is 4, 100% spots contain this read ̅L=165, σ=92.8, 66% Average length is 165, standard deviation is 92.8, 66% spots contain this read
| Experiment | Library Name | Platform | Strategy | Source | Selection | Layout | Action |
|---|---|---|---|---|---|---|---|
| SRX337491 | Illumina | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED |
| Biosample | Sample Description | Organism |
|---|---|---|
| SAMN02318736 (SRS471921) | liver of Microtus fortis, from hunan | Microtus fortis |
| Bioproject | SRA Study | Title |
|---|---|---|
| PRJNA215691 | SRP028948 | Microtus fortis Transcriptome or Gene expression |
Abstract:
Liver of Microtus fortis from hunan
SRA archive data
SRA archive data is normalized by the SRA load process and used by the SRA Toolkit to read and produce formats like FASTQ, SAM, etc. The default toolkit configuration enables it to find and retrieve SRA runs by accession.
Public SRA files are now available from GCP and AWS cloud platforms as well as from NCBI. Access to most data in the cloud requires a user account with the cloud service provider. The user’s account will incur costs for cloud compute or to copy data outside of the specified cloud service region.
| Type | Size | Location | Name | Free Egress | Access Type |
|---|---|---|---|---|---|
| SRA Normalized | 8,275,933 Kb | AWS | https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR954892/SRR954892 | worldwide | anonymous |
| NCBI | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-run-32/SRR000/954/SRR954892/SRR954892.2 | worldwide | anonymous | ||
| GCP | gs://sra-pub-run-102/SRR954892/SRR954892.2 | gs.us-east1 | gcp identity |
Original format
The original files submitted to SRA. These files may require specific software to open, read and interpret data.
| Type | Size | Location | Name | Free Egress | Access Type |
|---|---|---|---|---|---|
| fastq | 57,254 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1101_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 58,521 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1101_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 59,547 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1102_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 60,787 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1102_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 58,991 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1103_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 61,510 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1103_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 67,806 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1105_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 67,323 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1106_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 70,196 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1107_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 76,604 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1115_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,224 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1114_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 72,477 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1116_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 29,675 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1201_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 29,558 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1201_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 36,829 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1202_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 36,677 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1202_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 40,974 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1203_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 41,762 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1203_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 50,687 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1204_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,108 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1114_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 55,919 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1205_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 77,127 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1113_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,858 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1113_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 59,825 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1206_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 62,062 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1207_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 76,630 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1112_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 61,916 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1208_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 62,556 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1208_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 67,027 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1209_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 67,161 Kb | AWS | s3://sra-pub-src-4/SRR954892/Mf_liverA_l1_1209_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 69,207 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1210_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,415 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1112_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 71,679 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1211_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 76,762 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1111_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,326 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1111_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 70,827 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1212_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,640 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1110_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,048 Kb | AWS | s3://sra-pub-src-8/SRR954892/Mf_liverA_l1_1110_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 72,024 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1109_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 71,056 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1214_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 70,680 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1109_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 68,253 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1108_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,374 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1216_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,989 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1216_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 58,894 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1301_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 60,152 Kb | AWS | s3://sra-pub-src-6/SRR954892/Mf_liverA_l1_1301_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 66,655 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1108_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 62,390 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1302_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 71,942 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1107_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 64,450 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1303_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 65,386 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1304_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 66,957 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1304_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 67,416 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1305_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 69,306 Kb | AWS | s3://sra-pub-src-6/SRR954892/Mf_liverA_l1_1106_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 66,349 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1105_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 70,824 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1306_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 65,371 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1104_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 71,999 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1307_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 71,043 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1308_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 64,151 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1104_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 70,802 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1116_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,922 Kb | AWS | s3://sra-pub-src-8/SRR954892/Mf_liverA_l1_1309_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 78,409 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1115_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 50,906 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1204_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 56,381 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1205_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 59,196 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1206_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,707 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1312_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 62,547 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1207_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 68,879 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1210_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 78,034 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1313_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 70,826 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1211_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 72,816 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1212_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,520 Kb | AWS | s3://sra-pub-src-6/SRR954892/Mf_liverA_l1_1315_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,851 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1315_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,233 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1316_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,753 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1316_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 54,562 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2101_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 57,436 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2101_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 57,391 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2102_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 72,315 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1213_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 70,123 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1213_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 61,641 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2103_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 62,145 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_2104_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 63,372 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_2104_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 72,458 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1214_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 64,330 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_2105_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 64,799 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_2106_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 67,246 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2106_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,250 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1215_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 69,505 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2107_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 64,610 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2108_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,746 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1215_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 61,212 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1302_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 69,801 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_2109_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,003 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2110_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 63,104 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1303_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 72,819 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_2111_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,969 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_2111_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,555 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_2112_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 69,020 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1305_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,164 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_2113_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 76,109 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_2113_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,478 Kb | AWS | s3://sra-pub-src-5/SRR954892/Mf_liverA_l1_2114_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 68,855 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1306_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 71,060 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_2115_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 69,638 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1307_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,564 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_1308_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,796 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_2116_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 29,693 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2201_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 29,776 Kb | AWS | s3://sra-pub-src-8/SRR954892/Mf_liverA_l1_2201_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 36,786 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2202_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 36,737 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2202_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 43,239 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_2203_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 43,786 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_2203_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 50,333 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_2204_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 50,849 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2204_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 54,766 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_2205_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,562 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_1310_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 56,806 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2206_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,554 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_1310_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 61,097 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2207_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,645 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1311_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 61,145 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2208_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 76,527 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1311_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 77,605 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1312_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 65,412 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_2209_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 69,991 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_2210_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 70,062 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_2210_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 70,987 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_2211_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 71,943 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2211_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,002 Kb | AWS | s3://sra-pub-src-6/SRR954892/Mf_liverA_l1_2212_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,162 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_2212_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,499 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2213_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,016 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2213_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 20,758 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2214_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 20,868 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_2214_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,902 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_1313_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 76,381 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1314_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 78,528 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_1314_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 59,719 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_2102_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 59,909 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2103_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 62,917 Kb | AWS | s3://sra-pub-src-14/SRR954892/Mf_liverA_l1_2105_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 66,877 Kb | AWS | s3://sra-pub-src-13/SRR954892/Mf_liverA_l1_2107_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 65,056 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2108_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 68,440 Kb | AWS | s3://sra-pub-src-10/SRR954892/Mf_liverA_l1_2109_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 73,176 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_2110_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 76,149 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2112_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 75,642 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2114_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 72,970 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2115_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 74,152 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2116_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 72,099 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_1309_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 58,110 Kb | AWS | s3://sra-pub-src-12/SRR954892/Mf_liverA_l1_2206_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 62,759 Kb | AWS | s3://sra-pub-src-11/SRR954892/Mf_liverA_l1_2207_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 61,748 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_2208_2.fq.gz | - | Use Cloud Data Delivery |
| fastq | 64,633 Kb | AWS | s3://sra-pub-src-9/SRR954892/Mf_liverA_l1_2209_1.fq.gz | - | Use Cloud Data Delivery |
| fastq | 55,436 Kb | AWS | s3://sra-pub-src-5/SRR954892/Mf_liverA_l1_2205_2.fq.gz | - | Use Cloud Data Delivery |
- Egress and Access: what does it mean?
-
Egress
term used by cloud providers to describe cost (charged to the user) of moving data outside of the storage region Free Egresscolumn indicates where the data can be accessed without an egress charge: - worldwide can be downloaded from anywhere for free
- s3.us-east-1 is free to access from machines running in Amazon's us-east-1 region, access from other regions or transport outside of AWS will require paying egress charges
- gs.US is free to access from machines running in Google’s gs.US region, access from other regions or transport outside of GCP will require paying egress charges
Access Typedescribes whether a cloud service user account is necessary for data access. "anonymous" access means general public access Namecolumn provides either a link to free download location at NCBI or a URL for the cloud provider storage location. Either s3:// for Amazon or gs:// for Google storage
- Why is SRA data in the cloud?
-
In order to support large scale (hyper parallel) data analyses SRA data is now available at GCP and AWS with few caveats:
- SRA data is copied to the cloud from NCBI. There may be a lag between availability from NCBI and from CSP (cloud service providers)
- To access public data user account with the cloud service provider is required. Your account will incur costs for cloud compute and/or to copy data (either archival or results of your comute) outside of the specified cloud service region
- Distribution of protected data is signed by NIH account and requires user to operate in the same region as the data
SRA has also begun to provide access to originally submitted source files:
- not all files have been validated by SRA
- not all files have been copied to cloud locations (recovering it from NCBI tape system takes time ).
- the volume of this type of data a much larger and it is not used as often so we will keep most of it on tape or "cold" storage in cloud. As a result the data may not be available instantly and restore requests will be served on first-come first-served basis and cost of resore may be charged to your user account.
- What is "Cloud Data Delivery"?
-
Please visit SRA Data Delivery service to request Sequence Read Archive (SRA) data to be delivered to an Amazon Web Services (AWS) or Google Cloud Platform (GCP) bucket of your choice.
Taxonomy Analysis
- Unidentified reads: 44.09%
- Identified reads: 55.91%
Strong signals
| SuperKingdom | Organism | Rank | %% | Kbp | Coverage |
|---|---|---|---|---|---|
| Eukaryota | Microtus ochrogaster | species | 50.1 | 6,085,480 | |
| Eukaryota | Cricetulus griseus | species | 1.8 | 212,617 | |
| Eukaryota | Sciuromorpha | suborder | 0.9 | 105,201 | |
| Eukaryota | Peromyscus maniculatus bairdii | subspecies | 0.7 | 86,355 | |
| Eukaryota | Cetacea | order | 0.7 | 85,343 | |
| Eukaryota | Mesocricetus auratus | species | 0.6 | 73,121 | |
| Eukaryota | Nannospalax galili | species | 0.3 | 35,539 | |
| Eukaryota | Rattus norvegicus | species | 0.2 | 25,853 | |
| Eukaryota | Cercopithecidae | family | 0.1 | 17,027 |
- How to read results?
Results show distribution of reads mapping to specific taxonomy nodes as a percentage of total reads within the analyzed run. In cases where a read maps to more than one related taxonomy node, the read is reported as originating from the lowest shared taxonomic node. So when a read maps to two species belonging to the same genus, it is assigned at the genus level. Sequence reads from a single organism will map to several taxonomy nodes spanning the organism’s lineage. The number of reads mapping to higher level nodes will typically be greater than those that map to terminal nodes.
STAT results are proportional to the size of sequenced genomes. Given a mixed sample containing several organisms at equal copy number, proportionally more reads originate from the larger genomes. This means that the percentages reported by STAT will reflect genome size and must be considered against the genomic complexity of the sequenced sample.
- How can I query this analysis data?
Please take a look at NCBI SRA Cloud-based Taxonomy Analysis Table