Trichoplusia ni isolate:ovarian cell line Hi5 Genome sequencing and assembly

Identifiers: SRA: SRP104292
BioProject: PRJNA336361

Study Type: Whole Genome Sequencing

Abstract: We assembled the Trichoplus ni genome to establish the animal and the ovarian cell line Hi5 as a new model for studying small RNAs.

Center Project: Trichoplusia ni isolate:ovarian cell line Hi5

External Link: /pubmed:29376823

Related Files
Organism	Sample	File Name	Size	Updated
Trichoplusia ni	SAMN07305263	m140625_175339_42183_c100628472550000001823104408061463_s1_p0.fastq	846.2Mb	2020-03-26 16:54:29
Trichoplusia ni	SAMN07305264	m140625_201214_42183_c100628472550000001823104408061464_s1_p0.fastq	777.4Mb	2020-03-26 17:20:44
Trichoplusia ni	SAMN07305265	m140813_231929_42183_c100682782550000001823136202221572_s1_p0.fastq	820.7Mb	2020-03-26 11:20:26
Trichoplusia ni	SAMN07305266	m140814_013842_42183_c100682782550000001823136202221573_s1_p0.fastq	751.6Mb	2020-03-26 19:48:13
Trichoplusia ni	SAMN07305267	m140814_035755_42183_c100682782550000001823136202221574_s1_p0.fastq	710.6Mb	2020-03-26 17:20:44
Trichoplusia ni	SAMN07305268	m151028_174034_42183_c100894422550000001823208304231690_s1_p0.fastq	1.9Gb	2020-03-26 11:21:32
Trichoplusia ni	SAMN07305269	m151028_215657_42183_c100894422550000001823208304231691_s1_p0.fastq	1.6Gb	2020-03-26 11:22:13
Trichoplusia ni	SAMN07305270	m151029_021329_42183_c100894422550000001823208304231692_s1_p0.fastq	1.2Gb	2020-03-26 16:18:40
Trichoplusia ni	SAMN07305271	m151029_062938_42183_c100894422550000001823208304231693_s1_p0.fastq	1.7Gb	2020-03-26 16:18:40
Trichoplusia ni	SAMN07305272	m151029_104554_42183_c100894422550000001823208304231694_s1_p0.fastq	1.4Gb	2020-03-26 11:22:23
Trichoplusia ni	SAMN07305273	m151029_150214_42183_c100894422550000001823208304231695_s1_p0.fastq	1.4Gb	2020-03-26 17:20:44
Trichoplusia ni	SAMN07305274	m151029_192152_42183_c100894422550000001823208304231696_s1_p0.fastq	1.5Gb	2020-03-26 11:24:09
Trichoplusia ni	SAMN07305275	m151029_233454_42183_c100894422550000001823208304231697_s1_p0.fastq	1.7Gb	2020-03-26 16:18:39
Trichoplusia ni	SAMN07305276	m151103_000217_42183_c100894372550000001823208304231672_s1_p0.fastq	1.8Gb	2020-03-26 11:21:57
Trichoplusia ni	SAMN07305277	m151103_041837_42183_c100894372550000001823208304231673_s1_p0.fastq	1.7Gb	2020-03-26 16:18:40
Trichoplusia ni	SAMN07305278	m151103_083457_42183_c100894372550000001823208304231674_s1_p0.fastq	1.6Gb	2020-03-26 16:18:40
Trichoplusia ni	SAMN07305279	m151103_125117_42183_c100894372550000001823208304231675_s1_p0.fastq	307.1Mb	2020-03-26 11:24:45
Trichoplusia ni	SAMN07305280	m151110_020951_42183_c100925362550000001823208005121671_s1_p0.fastq	421.4Mb	2020-03-26 16:18:40
Trichoplusia ni	SAMN07305281	m151110_062611_42183_c100925362550000001823208005121672_s1_p0.fastq	441.0Mb	2020-03-26 16:18:40
Trichoplusia ni	SAMN07305282	m151110_104231_42183_c100925362550000001823208005121673_s1_p0.fastq	509.3Mb	2020-03-26 16:18:40
Trichoplusia ni	SAMN07305283	m151110_145851_42183_c100925362550000001823208005121674_s1_p0.fastq	505.0Mb	2020-03-26 19:48:13
Trichoplusia ni	SAMN07305284	m151110_191511_42183_c100925362550000001823208005121675_s1_p0.fastq	451.2Mb	2020-03-26 11:33:58
Trichoplusia ni	SAMN07305285	m151110_233518_42183_c100925362550000001823208005121676_s1_p0.fastq	482.5Mb	2020-03-26 11:23:44
Trichoplusia ni	SAMN07305286	m151111_034752_42183_c100925362550000001823208005121677_s1_p0.fastq	504.1Mb	2020-03-26 19:48:13
Trichoplusia ni	SAMN07305287	m151113_003950_42183_c100894372550000001823208304231676_s1_p0.fastq	1.7Gb	2020-03-26 11:21:52
Trichoplusia ni	SAMN07305288	m151113_045536_42183_c100894372550000001823208304231677_s1_p0.fastq	412.5Mb	2020-03-26 19:48:13
Trichoplusia ni	SAMN07305289	m151113_091153_42183_c100925712550000001823208005121600_s1_p0.fastq	1.3Gb	2020-03-26 19:48:13
Trichoplusia ni	SAMN07305290	m160127_000539_42183_c100933742550000001823210305251620_s1_p0.fastq	133.0Mb	2020-03-26 11:20:16
Trichoplusia ni	SAMN07305291	m160127_042148_42183_c100933742550000001823210305251621_s1_p0.fastq	104.5Mb	2020-03-26 11:34:14
Trichoplusia ni	SAMN07305292	m160127_083808_42183_c100933742550000001823210305251622_s1_p0.fastq	86.3Mb	2020-03-26 16:18:40
Trichoplusia ni	SAMN07305293	m160127_125428_42183_c100933742550000001823210305251623_s1_p0.fastq	92.4Mb	2020-03-26 11:20:10
Trichoplusia ni	SAMN07305294	m160127_171048_42183_c100933742550000001823210305251624_s1_p0.fastq	64.0Mb	2020-03-26 11:20:16
Trichoplusia ni	SAMN07305295	m160127_212708_42183_c100933742550000001823210305251625_s1_p0.fastq	53.0Mb	2020-03-26 11:20:10
Trichoplusia ni	SAMN07305296	m160205_041754_42183_c100957572550000001823213806221634_s1_p0.fastq	3.8Gb	2020-03-26 19:48:13
Trichoplusia ni	SAMN07305297	m160205_083414_42183_c100957572550000001823213806221635_s1_p0.fastq	3.3Gb	2020-03-26 16:18:40
Trichoplusia ni	SAMN07305298	m160205_125251_42183_c100957572550000001823213806221636_s1_p0.fastq	3.1Gb	2020-03-26 17:20:44
Trichoplusia ni	SAMN07305299	m160205_170654_42183_c100957572550000001823213806221637_s1_p0.fastq	3.2Gb	2020-03-26 11:20:46
Trichoplusia ni	SAMN07305300	m160205_212535_42183_c100934322550000001823210305251650_s1_p0.fastq	3.2Gb	2020-03-26 11:34:54
Trichoplusia ni	SAMN07305301	m160206_014404_42183_c100934322550000001823210305251651_s1_p0.fastq	2.9Gb	2020-03-26 17:20:44
Trichoplusia ni	SAMN07305302	m160210_002540_42183_c100934322550000001823210305251653_s1_p0.fastq	3.1Gb	2020-03-26 16:54:54
Trichoplusia ni	SAMN07305303	m160210_044144_42183_c100934322550000001823210305251654_s1_p0.fastq	2.7Gb	2020-03-26 17:20:44

Related SRA data

Experiments:: 90 ( 90 samples )

Runs:: 90 (515.8Gbp; 257.8Gb)

Additional objects:

File type	count
SRA Lite	90
fastq	70
pacbio_native	41